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利用生物信息学分析研究缩酚酸环醚盐的作用机制

Investigating the Mechanisms of Action of Depside Salt from Using Bioinformatic Analysis.

作者信息

Li Hua, Liu Hongying

机构信息

Shanghai Institute of Cardiovascular Diseases, Zhongshan Hospital, Fudan University, Shanghai 200032, China.

Institutes of Biomedical Sciences, Fudan University, Shanghai 200032, China.

出版信息

Evid Based Complement Alternat Med. 2017;2017:5671860. doi: 10.1155/2017/5671860. Epub 2017 Nov 19.

Abstract

is a traditional Chinese medicinal herb used for treating cardiovascular diseases. Depside salt from (DSSM) contains the following active components: magnesium lithospermate B, lithospermic acid, and rosmarinic acid. This study aimed to reveal the mechanisms of action of DSSM. After searching for DSSM-associated genes in GeneCards, Search Tool for Interacting Chemicals, SuperTarget, PubChem, and Comparative Toxicogenomics Database, they were subjected to enrichment analysis using Multifaceted Analysis Tool for Human Transcriptome. A protein-protein interaction (PPI) network was visualised; module analysis was conducted using the Cytoscape software. Finally, a transcriptional regulatory network was constructed using the TRRUST database and Cytoscape. Seventy-three DSSM-associated genes were identified. JUN, TNF, NFKB1, and FOS were hub nodes in the PPI network. Modules 1 and 2 were identified from the PPI network, with pathway enrichment analysis, showing that the presence of and in module 1 was indicative of a particular association with the NF-B signalling pathway. JUN, TNF, NFKB1, FOS, and BCL2 exhibited notable interactions among themselves in the PPI network. Several regulatory relationships (such as → , → and → ) were also found in the regulatory network. Thus, DSSM exerts effects against cardiovascular diseases by targeting , , , , and .

摘要

是一种用于治疗心血管疾病的传统中草药。来自[具体名称未给出]的缩酚酸肽盐(DSSM)含有以下活性成分:紫草酸镁、紫草酸和迷迭香酸。本研究旨在揭示DSSM的作用机制。在GeneCards、相互作用化学物质搜索工具、SuperTarget、PubChem和比较毒理基因组学数据库中搜索与DSSM相关的基因后,使用人类转录组多方面分析工具对它们进行富集分析。可视化了蛋白质-蛋白质相互作用(PPI)网络;使用Cytoscape软件进行模块分析。最后,使用TRRUST数据库和Cytoscape构建转录调控网络。鉴定出73个与DSSM相关的基因。JUN、TNF、NFKB1和FOS是PPI网络中的枢纽节点。从PPI网络中鉴定出模块1和模块2,通过通路富集分析表明,模块1中[具体成分未给出]和[具体成分未给出]的存在表明与NF-κB信号通路存在特定关联。JUN、TNF、NFKB1、FOS和BCL2在PPI网络中彼此之间表现出显著的相互作用。在调控网络中还发现了几种调控关系(如[具体关系未给出]→[具体关系未给出]、[具体关系未给出]→[具体关系未给出]和[具体关系未给出]→[具体关系未给出])。因此,DSSM通过靶向[具体基因未给出]、[具体基因未给出]、[具体基因未给出]、[具体基因未给出]和[具体基因未给出]对心血管疾病发挥作用。

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