从土壤中分离出的新型细菌sp. 菌株GAS474的基因组序列
Genome Sequence of sp. Strain GAS474, a Novel Bacterium Isolated from Soil.
作者信息
Pold Grace, Conlon Erin M, Huntemann Marcel, Pillay Manoj, Mikhailova Natalia, Stamatis Dimitrios, Reddy T B K, Daum Chris, Shapiro Nicole, Kyrpides Nikos, Woyke Tanja, DeAngelis Kristen M
机构信息
Graduate Program in Organismic and Evolutionary Biology, University of Massachusetts-Amherst, Amherst, Massachusetts, USA.
Department of Mathematics and Statistics, University of Massachusetts-Amherst, Amherst, Massachusetts, USA.
出版信息
Genome Announc. 2018 Jan 25;6(4):e01451-17. doi: 10.1128/genomeA.01451-17.
Abstract
sp. strain GAS474 was isolated from the mineral soil of a temperate deciduous forest in central Massachusetts. Here, we present the complete genome sequence of this phylogenetically novel organism, which consists of a total of 3,763,444 bp on a single scaffold, with a 65.8% GC content and 3,273 predicted open reading frames.
摘要
菌株GAS474是从马萨诸塞州中部温带落叶林的矿质土壤中分离出来的。在此，我们展示了这种系统发育上新颖的生物体的完整基因组序列，其由单个支架上总共3,763,444个碱基对组成，GC含量为65.8%，预测有3,273个开放阅读框。
相似文献
1
Genome Sequence of sp. Strain GAS474, a Novel Bacterium Isolated from Soil.
Genome Announc. 2018 Jan 25;6(4):e01451-17. doi: 10.1128/genomeA.01451-17.
2
Complete Genome Sequence of the Novel sp. Strain ORNL1, a Verrucomicrobium Isolated from the Populus deltoides Rhizosphere.
Microbiol Resour Announc. 2020 Jul 2;9(27):e00617-20. doi: 10.1128/MRA.00617-20.
3
Complete Genome Sequence of sp. Strain FeAm09, a Moderately Acidophilic Soil Bacterium.
Microbiol Resour Announc. 2021 Jan 14;10(2):e00979-20. doi: 10.1128/MRA.00979-20.
4
Complete Genome Sequence of Bisphenol A-Degrading Bacterium sp. Strain A3, Isolated from Contaminated Soil.
Microbiol Resour Announc. 2021 Jan 7;10(1):e01088-20. doi: 10.1128/MRA.01088-20.
5
Draft Genome Sequence of sp. Strain IGB-42, a Chitinolytic Bacterium Isolated from a Soil Sample of an Anthill in Stuttgart, Germany.
Microbiol Resour Announc. 2020 Mar 5;9(10):e01454-19. doi: 10.1128/MRA.01454-19.
6
Draft Genome Sequence of the Plant Growth-Promoting Bacterium sp. SCPG-7, Isolated from Saline Soil.
Genome Announc. 2017 Aug 10;5(32):e00702-17. doi: 10.1128/genomeA.00702-17.
7
Complete Genome Sequence of sp. Strain KM01, a Predatory Bacterium Isolated from Soil.
Microbiol Resour Announc. 2020 Oct 1;9(40):e00838-20. doi: 10.1128/MRA.00838-20.
8
Draft Genome Sequence of Pseudomonas sp. Strain CCA1, Isolated from Leaf Soil.
Genome Announc. 2016 Dec 8;4(6):e01371-16. doi: 10.1128/genomeA.01371-16.
9
Draft Genome Sequence of sp. Strain NL15-2K, a Degrader of Lignin-Derived Aromatic Compounds, Isolated from Forest Soil.
Microbiol Resour Announc. 2019 Mar 7;8(10). doi: 10.1128/MRA.01456-18. eCollection 2019 Mar.
10
Complete Genome Sequence of Cellulomonas sp. Strain Y8, a High-GC-Content Plasmid-Free Heavy Metal-Resistant Bacterium Isolated from Farmland Soil.
Microbiol Resour Announc. 2019 Nov 14;8(46):e01066-19. doi: 10.1128/MRA.01066-19.
引用本文的文献
1
Microbiota Involved in the Degradation of Polysaccharide and Microbial Enzymatic Potential Revealed by Microbiome and Metagenome.
Microorganisms. 2025 Jan 25;13(2):263. doi: 10.3390/microorganisms13020263.
2
A Degeneration Gradient of Poplar Trees Contributes to the Taxonomic, Functional, and Resistome Diversity of Bacterial Communities in Rhizosphere Soils.
Int J Mol Sci. 2021 Mar 26;22(7):3438. doi: 10.3390/ijms22073438.
3
Carbon Use Efficiency and Its Temperature Sensitivity Covary in Soil Bacteria.
mBio. 2020 Jan 21;11(1):e02293-19. doi: 10.1128/mBio.02293-19.
本文引用的文献
1
Methylacidiphilum fumariolicum SolV, a thermoacidophilic 'Knallgas' methanotroph with both an oxygen-sensitive and -insensitive hydrogenase.
ISME J. 2017 Apr;11(4):945-958. doi: 10.1038/ismej.2016.171. Epub 2016 Dec 9.
2
Supporting community annotation and user collaboration in the integrated microbial genomes (IMG) system.
BMC Genomics. 2016 Apr 26;17:307. doi: 10.1186/s12864-016-2629-y.
3
The standard operating procedure of the DOE-JGI Microbial Genome Annotation Pipeline (MGAP v.4).
Stand Genomic Sci. 2015 Oct 26;10:86. doi: 10.1186/s40793-015-0077-y. eCollection 2015.
4
Expanding the verrucomicrobial methanotrophic world: description of three novel species of Methylacidimicrobium gen. nov.
Appl Environ Microbiol. 2014 Nov;80(21):6782-91. doi: 10.1128/AEM.01838-14. Epub 2014 Aug 29.
5
Nonhybrid, finished microbial genome assemblies from long-read SMRT sequencing data.
Nat Methods. 2013 Jun;10(6):563-9. doi: 10.1038/nmeth.2474. Epub 2013 May 5.
6
dbCAN: a web resource for automated carbohydrate-active enzyme annotation.
Nucleic Acids Res. 2012 Jul;40(Web Server issue):W445-51. doi: 10.1093/nar/gks479. Epub 2012 May 29.
7
The under-recognized dominance of Verrucomicrobia in soil bacterial communities.
Soil Biol Biochem. 2011 Jul;43(7):1450-1455. doi: 10.1016/j.soilbio.2011.03.012.
8
SignalP 4.0: discriminating signal peptides from transmembrane regions.
Nat Methods. 2011 Sep 29;8(10):785-6. doi: 10.1038/nmeth.1701.
9
Real-time DNA sequencing from single polymerase molecules.
Science. 2009 Jan 2;323(5910):133-8. doi: 10.1126/science.1162986. Epub 2008 Nov 20.
10
Effects of growth medium, inoculum size, and incubation time on culturability and isolation of soil bacteria.
Appl Environ Microbiol. 2005 Feb;71(2):826-34. doi: 10.1128/AEM.71.2.826-834.2005.
Zotero 插件