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围绕大型海洋基础设施进行鱼类DNA条形码分析,以改进生物多样性评估和监测。

Fish DNA barcoding around large marine infrastructure for improved biodiversity assessment and monitoring.

作者信息

Rosas Ulises, Menendez Francisco, Cornejo Rodolfo, Canales Remy, Velez-Zuazo Ximena

机构信息

a Center for Conservation and Sustainability, Smithsonian Conservation Biology Institute, National Zoological Park , Washington , DC , USA.

b Departamento de Ciencias Biológicas, Universidad Nacional Mayor de San Marcos , Lima , Peru.

出版信息

Mitochondrial DNA A DNA Mapp Seq Anal. 2018 Dec;29(8):1174-1179. doi: 10.1080/24701394.2018.1431225. Epub 2018 Jan 26.

Abstract

Accurate species-level identification is pivotal for environmental assessments and monitoring. The PERU LNG terminal is composed of large marine infrastructure located on the central coast of Peru. Since construction, taxonomically challenging species such as drum fishes (Sciaenidae) have been attracted to the new hard-bottom habitat. We conducted a DNA barcoding study to investigate fish diversity and constructed a DNA barcode reference library. We examined 56 vouchered specimens and identified 24 unique species. Intra- and interspecific divergence estimates ranged between 0 and 0.64% and 11 and 35.5%, respectively. We assessed the efficiency of the reference library to identify 29 non-vouchered specimens. We had 82.5% efficiency by using both our reference library (n = 17) and GenBank (n = 24). We highlight the importance of implementing molecular barcoding for complementing biodiversity assessments in marine environments. This study represents a first step towards generating a comprehensive DNA barcode reference library for marine fishes in Peru.

摘要

准确的物种水平鉴定对于环境评估和监测至关重要。秘鲁液化天然气终端由位于秘鲁中部海岸的大型海洋基础设施组成。自建设以来,分类学上具有挑战性的物种,如鼓鱼(石首鱼科),已被吸引到新的硬底栖生境中。我们进行了一项DNA条形码研究,以调查鱼类多样性并构建了一个DNA条形码参考文库。我们检查了56个有凭证的标本,并鉴定出24个独特的物种。种内和种间分歧估计分别在0%至0.64%和11%至35.5%之间。我们评估了参考文库识别29个无凭证标本的效率。通过使用我们的参考文库(n = 17)和GenBank(n = 24),我们的效率达到了82.5%。我们强调了实施分子条形码以补充海洋环境生物多样性评估的重要性。这项研究是为秘鲁海洋鱼类生成一个全面的DNA条形码参考文库的第一步。

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