Suppr超能文献

新型方法揭示了在低水合条件下暴露的环境群落中细菌散布者的狭窄系统发育分布。

Novel Method Reveals a Narrow Phylogenetic Distribution of Bacterial Dispersers in Environmental Communities Exposed to Low-Hydration Conditions.

机构信息

Geological Survey of Denmark and Greenland, Copenhagen, Denmark

University of Copenhagen, Department of Plant and Environmental Sciences, Copenhagen, Denmark.

出版信息

Appl Environ Microbiol. 2018 Mar 19;84(7). doi: 10.1128/AEM.02857-17. Print 2018 Apr 1.

Abstract

In this study, we developed a method that provides profiles of community-level surface dispersal from environmental samples under controlled hydration conditions and enables us to isolate and uncover the diversity of the fastest bacterial dispersers. The method expands on the porous surface model (PSM), previously used to monitor the dispersal of individual bacterial strains in liquid films at the surface of a porous ceramic disc. The novel procedure targets complex communities and captures the dispersed bacteria on a solid medium for growth and detection. The method was first validated by distinguishing motile and strains from their nonmotile mutants. Applying the method to soil and lake water bacterial communities showed that community-scale dispersal declined as conditions became drier. However, for both communities, dispersal was detected even under low-hydration conditions (matric potential, -3.1 kPa) previously proven too dry for strain KT2440 motility. We were then able to specifically recover and characterize the fastest dispersers from the inoculated communities. For both soil and lake samples, 16S rRNA gene amplicon sequencing revealed that the fastest dispersers were substantially less diverse than the total communities. The dispersing fraction of the soil microbial community was dominated by species cells, which increased in abundance under low-hydration conditions, while the dispersing fraction of the lake community was dominated by species cells and, under wet conditions (-0.5 kPa), also by species cells. The results gained in this study bring us a step closer to assessing the dispersal ability within complex communities under environmentally relevant conditions. Dispersal is a key process of bacterial community assembly, and yet, very few attempts have been made to assess bacterial dispersal at the community level, as the focus has previously been on pure-culture studies. A crucial factor for dispersal in habitats where hydration conditions vary, such as soils, is the thickness of the liquid films surrounding solid surfaces, but little is known about how the ability to disperse in such films varies within bacterial communities. Therefore, we developed a method to profile community dispersal and identify fast dispersers on a rough surface resembling soil surfaces. Our results suggest that within the motile fraction of a bacterial community, only a minority of the bacterial types are able to disperse in the thinnest liquid films. During dry periods, these efficient dispersers can gain a significant fitness advantage through their ability to colonize new habitats ahead of the rest of the community.

摘要

在这项研究中,我们开发了一种方法,该方法可在受控水合条件下提供社区水平表面扩散的图谱,并使我们能够分离和揭示最快细菌扩散体的多样性。该方法扩展了多孔表面模型(PSM),该模型先前用于监测多孔陶瓷盘表面液膜中单个细菌菌株的分散。新方法针对复杂的群落,并在固体培养基上捕获分散的细菌进行生长和检测。该方法首先通过区分其非运动突变体的运动株和非运动株来验证。将该方法应用于土壤和湖水细菌群落表明,随着条件变干燥,群落尺度的扩散减少。但是,对于这两个群落,即使在先前证明对于 KT2440 菌株的运动太干燥的低水合条件(基质势,-3.1 kPa)下,也检测到了扩散。然后,我们能够从接种的群落中专门回收和表征最快的扩散体。对于土壤和湖水样本,16S rRNA 基因扩增子测序显示,最快的扩散体与总群落相比多样性要低得多。土壤微生物群落的扩散部分主要由细胞组成,这些细胞在低水合条件下丰度增加,而湖水群落的扩散部分主要由细胞组成,在潮湿条件(-0.5 kPa)下,也由细胞组成。本研究获得的结果使我们更接近于在与环境相关的条件下评估复杂群落中的扩散能力。扩散是细菌群落组装的关键过程,但是,由于以前的重点是纯培养研究,因此很少有人尝试评估群落水平的细菌扩散。在水合条件变化的栖息地(例如土壤)中扩散的关键因素是围绕固体表面的液膜的厚度,但是对于在这种液膜中扩散的能力在细菌群落中的变化知之甚少。因此,我们开发了一种方法来描绘群落扩散并在类似于土壤表面的粗糙表面上识别快速扩散体。我们的结果表明,在细菌群落的运动部分中,只有少数细菌类型能够在最薄的液膜中扩散。在干燥期,这些有效的扩散体能够通过其在社区其他成员之前殖民新栖息地的能力获得显著的适应优势。

相似文献

2
Bacterial Dispersers along Preferential Flow Paths of a Clay Till Depth Profile.
Appl Environ Microbiol. 2019 Mar 6;85(6). doi: 10.1128/AEM.02658-18. Print 2019 Mar 15.
3
Hydration-controlled bacterial motility and dispersal on surfaces.
Proc Natl Acad Sci U S A. 2010 Aug 10;107(32):14369-72. doi: 10.1073/pnas.1008392107. Epub 2010 Jul 21.
6
Variations in bacterial community succession and assembly mechanisms with mine age across various habitats in coal mining subsidence water areas.
Sci Total Environ. 2024 Oct 20;948:174822. doi: 10.1016/j.scitotenv.2024.174822. Epub 2024 Jul 18.
7
Early colonizers of unoccupied habitats represent a minority of the soil bacterial community.
FEMS Microbiol Ecol. 2015 May;91(5). doi: 10.1093/femsec/fiv024. Epub 2015 Mar 15.
9
Contribution of different bacterial dispersal sources to lakes: Population and community effects in different seasons.
Environ Microbiol. 2017 Jun;19(6):2391-2404. doi: 10.1111/1462-2920.13749. Epub 2017 May 5.
10
Experimental Testing of Dispersal Limitation in Soil Bacterial Communities with a Propagule Addition Approach.
Microb Ecol. 2019 May;77(4):905-912. doi: 10.1007/s00248-018-1284-z. Epub 2018 Nov 12.

引用本文的文献

1
Bacterial Dispersers along Preferential Flow Paths of a Clay Till Depth Profile.
Appl Environ Microbiol. 2019 Mar 6;85(6). doi: 10.1128/AEM.02658-18. Print 2019 Mar 15.

本文引用的文献

1
Exact sequence variants should replace operational taxonomic units in marker-gene data analysis.
ISME J. 2017 Dec;11(12):2639-2643. doi: 10.1038/ismej.2017.119. Epub 2017 Jul 21.
2
Sliding on the surface: bacterial spreading without an active motor.
Environ Microbiol. 2017 Jul;19(7):2537-2545. doi: 10.1111/1462-2920.13741. Epub 2017 May 10.
3
Introducing EzBioCloud: a taxonomically united database of 16S rRNA gene sequences and whole-genome assemblies.
Int J Syst Evol Microbiol. 2017 May;67(5):1613-1617. doi: 10.1099/ijsem.0.001755. Epub 2017 May 30.
4
High-Level Culturability of Epiphytic Bacteria and Frequency of Biosurfactant Producers on Leaves.
Appl Environ Microbiol. 2016 Sep 16;82(19):5997-6009. doi: 10.1128/AEM.01751-16. Print 2016 Oct 1.
5
DADA2: High-resolution sample inference from Illumina amplicon data.
Nat Methods. 2016 Jul;13(7):581-3. doi: 10.1038/nmeth.3869. Epub 2016 May 23.
6
Distribution and diversity of biosurfactant-producing bacteria in a wastewater treatment plant.
Environ Sci Pollut Res Int. 2016 May;23(10):9993-10004. doi: 10.1007/s11356-016-6249-5. Epub 2016 Feb 11.
7
Multispecies Swarms of Social Microorganisms as Moving Ecosystems.
Trends Microbiol. 2016 Apr;24(4):257-269. doi: 10.1016/j.tim.2015.12.008. Epub 2016 Jan 25.
9
Back to Basics--The Influence of DNA Extraction and Primer Choice on Phylogenetic Analysis of Activated Sludge Communities.
PLoS One. 2015 Jul 16;10(7):e0132783. doi: 10.1371/journal.pone.0132783. eCollection 2015.
10
Bacterial swarms recruit cargo bacteria to pave the way in toxic environments.
mBio. 2015 May 12;6(3):e00074-15. doi: 10.1128/mBio.00074-15.

文献AI研究员

20分钟写一篇综述,助力文献阅读效率提升50倍。

立即体验

用中文搜PubMed

大模型驱动的PubMed中文搜索引擎

马上搜索

文档翻译

学术文献翻译模型,支持多种主流文档格式。

立即体验