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一种非紧密化学机械耦合模型,用于研究分子马达运动动力学对力的依赖性。

A non-tight chemomechanical coupling model for force-dependence of movement dynamics of molecular motors.

机构信息

School of Materials Science and Energy Engineering, FoShan University, Guangdong, 528000, China.

出版信息

Phys Chem Chem Phys. 2018 Feb 14;20(7):4752-4759. doi: 10.1039/c7cp05557a.

Abstract

Based on the available experimental evidence, we present a simple and general model to describe the movement dynamics of molecular motors that can move processively on their linear tracks by using the chemical energy derived from ATP hydrolysis. An important aspect of the model is the non-tight coupling between the ATP hydrolysis and mechanical stepping, in contrast to the prevailing models presented in the literature that assume the tight chemomechanical coupling. With kinesin as an example, based on the current model, we study in detail its movement dynamics under a backward load, reproducing well the diverse available single-molecule experimental data such as the forward to backward step ratio, velocity, dwell time, randomness, run length, etc., versus the load. Moreover, predicted results are provided on the force-dependence of the mean number of ATP molecules consumed per mechanical step. Additionally, the theoretical data for the dynamics of myosin-V obtained based on the model are also in good agreement with the available experimental data.

摘要

基于现有的实验证据,我们提出了一个简单而通用的模型来描述分子马达的运动动力学,这些分子马达可以通过利用源自 ATP 水解的化学能在其线性轨道上进行连续运动。该模型的一个重要方面是 ATP 水解和机械步移之间的非紧密耦合,与文献中提出的普遍假设紧密化学机械耦合的模型形成对比。以驱动蛋白为例,基于当前模型,我们详细研究了其在向后负载下的运动动力学,很好地再现了各种可用的单分子实验数据,例如前进到后退的步长比、速度、停留时间、随机性、运行长度等,以及与负载的关系。此外,还预测了机械步中每个分子马达消耗的平均 ATP 分子数量与力的依赖性。此外,基于该模型获得的肌球蛋白 V 动力学的理论数据也与现有实验数据非常吻合。

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