Beć Krzysztof B, Grabska Justyna, Czarnecki Mirosław A
Department of Chemistry, School of Science and Technology, Kwansei Gakuin University, Sanda, Hyogo 669-1337, Japan.
Department of Chemistry, School of Science and Technology, Kwansei Gakuin University, Sanda, Hyogo 669-1337, Japan.
Spectrochim Acta A Mol Biomol Spectrosc. 2018 May 15;197:176-184. doi: 10.1016/j.saa.2018.01.041. Epub 2018 Mar 28.
We investigated near-infrared (7500-4000 cm) spectra of n-hexanol, cyclohexanol and phenol in CCl (0.2 M) by using anharmonic quantum calculations. These molecules represent three major kinds of alcohols; linear and cyclic aliphatic, and aromatic ones. Vibrational second-order perturbation theory (VPT2) was employed to calculate the first overtones and binary combination modes and to reproduce the experimental NIR spectra. The level of conformational flexibility of these three alcohols varies from one stable conformer of phenol through four conformers of cyclohexanol to few hundreds conformers in the case of n-hexanol. To take into account the most relevant conformational population of n-hexanol, a systematic conformational search was performed. Accurate reproduction of the experimental NIR spectra was achieved and detailed spectra-structure correlations were obtained for these three alcohols. VPT2 approach provides less reliable description of highly anharmonic modes, i.e. OH stretching. In the present work this limitation was manifested in erroneous results yielded by VPT2 for 2νOH mode of cyclohexanol. To study the anharmonicity of this mode we solved the corresponding time-independent Schrödinger equation based on a dense-grid probing of the relevant vibrational potential. These results allowed for significant improvement of the agreement between the calculated and experimental 2νOH band of cyclohexanol. Various important biomolecules include similar structural units to the systems investigated here. A detailed knowledge on spectral properties of these three types of alcohols is therefore essential for advancing our understanding of NIR spectroscopy of biomolecules.
我们通过非谐量子计算研究了正己醇、环己醇和苯酚在四氯化碳(0.2 M)中的近红外(7500 - 4000 cm⁻¹)光谱。这些分子代表了三种主要类型的醇;直链和环状脂肪族醇以及芳香族醇。采用振动二阶微扰理论(VPT2)计算一次泛音和二元组合模式,并重现实验近红外光谱。这三种醇的构象灵活性水平各不相同,从苯酚的一种稳定构象体,到环己醇的四种构象体,再到正己醇的数百种构象体。为了考虑正己醇最相关的构象分布,我们进行了系统的构象搜索。实现了对实验近红外光谱的精确重现,并获得了这三种醇详细的光谱 - 结构相关性。VPT2方法对高非谐模式(即OH伸缩振动)的描述不太可靠。在本工作中,这种局限性表现为VPT2对环己醇的2νOH模式给出了错误结果。为了研究该模式的非谐性,我们基于对相关振动势能的密集网格探测求解了相应的与时间无关的薛定谔方程。这些结果显著改善了环己醇计算的和实验的2νOH谱带之间的一致性。各种重要的生物分子包含与本文所研究体系类似的结构单元。因此,详细了解这三种醇的光谱性质对于增进我们对生物分子近红外光谱的理解至关重要。