Gonzo Elio Emilio, Wuertz Stefan, Rajal Veronica B
1INIQUI (CONICET)-Facultad de Ingeniería, Universidad Nacional de Salta, Av. Bolivia 5150, Salta, 4400 Argentina.
2Singapore Centre for Environmental Life Sciences Engineering (SCELSE), Nanyang Technological University, Singapore, 637551 Singapore.
NPJ Biofilms Microbiomes. 2018 Mar 8;4:5. doi: 10.1038/s41522-017-0045-y. eCollection 2018.
Biofilm systems can be modeled using a variety of analytical and numerical approaches, usually by making simplifying assumptions regarding biofilm heterogeneity and activity as well as effective diffusivity. Inhibition kinetics, albeit common in experimental systems, are rarely considered and analytical approaches are either lacking or consider effective diffusivity of the substrate and the biofilm density to remain constant. To address this obvious knowledge gap an analytical procedure to estimate the effectiveness factor (dimensionless substrate mass flux at the biofilm-fluid interface) was developed for a continuum heterogeneous biofilm with multiple limiting-substrate Monod kinetics to different types of inhibition kinetics. The simple perturbation technique, previously validated to quantify biofilm activity, was applied to systems where either the substrate or the inhibitor is the limiting component, and cases where the inhibitor is a reaction product or the substrate also acts as the inhibitor. Explicit analytical equations are presented for the effectiveness factor estimation and, therefore, the calculation of biomass growth rate or limiting substrate/inhibitor consumption rate, for a given biofilm thickness. The robustness of the new biofilm model was tested using kinetic parameters experimentally determined for the growth of CCRC 14365 on phenol. Several additional cases have been analyzed, including examples where the effectiveness factor can reach values greater than unity, characteristic of systems with inhibition kinetics. Criteria to establish when the effectiveness factor can reach values greater than unity in each of the cases studied are also presented.
生物膜系统可以使用多种分析和数值方法进行建模,通常是通过对生物膜的非均质性、活性以及有效扩散率做出简化假设来实现。抑制动力学虽然在实验系统中很常见,但很少被考虑,并且缺乏分析方法,或者所采用的分析方法认为底物的有效扩散率和生物膜密度保持恒定。为了弥补这一明显的知识空白,针对具有多种限制底物莫诺德动力学以及不同类型抑制动力学的连续非均质生物膜,开发了一种用于估算有效因子(生物膜 - 流体界面处的无量纲底物质量通量)的分析程序。先前已验证可用于量化生物膜活性的简单微扰技术,被应用于底物或抑制剂为限制成分的系统,以及抑制剂为反应产物或底物也充当抑制剂的情况。针对给定的生物膜厚度,给出了用于估算有效因子的显式分析方程,从而可计算生物量生长速率或限制底物/抑制剂消耗速率。使用通过实验确定的嗜油假单胞菌CCRC 14365在苯酚上生长的动力学参数,对新的生物膜模型的稳健性进行了测试。还分析了其他几种情况,包括有效因子可以达到大于1的值的示例,这是具有抑制动力学系统的特征。还给出了在所研究的每种情况下确定有效因子何时可以达到大于1的值的标准。