MOE Key Lab of Bioinformatics, School of Life Sciences, Tsinghua University, Beijing 100084, China; Center for Synthetic and Systems Biology, Tsinghua University, Beijing 100084, China; Center for Nano and Micro-Mechanics, Tsinghua University, Beijing 100084, China.
MOE Key Lab of Bioinformatics, School of Life Sciences, Tsinghua University, Beijing 100084, China; Center for Synthetic and Systems Biology, Tsinghua University, Beijing 100084, China.
Metab Eng. 2018 May;47:143-152. doi: 10.1016/j.ymben.2018.03.013. Epub 2018 Mar 15.
Poly(3-hydroxybutyrate-co-4-hydroxybutyrate) [P(3HB-co-4HB)] is one of the most promising biomaterials expected to be used in a wide range of scenarios. However, its large-scale production is still hindered by the high cost. Here we report the engineering of Halomonas bluephagenesis as a low-cost platform for non-sterile and continuous fermentative production of P(3HB-co-4HB) from glucose. Two interrelated 4-hydroxybutyrate (4HB) biosynthesis pathways were constructed to guarantee 4HB monomer supply for P(3HB-co-4HB) synthesis by working in concert with 3-hydroxybutyrate (3HB) pathway. Interestingly, only 0.17 mol% 4HB in the copolymer was obtained during shake flask studies. Pathway debugging using structurally related carbon source located the failure as insufficient 4HB accumulation. Further whole genome sequencing and comparative genomic analysis identified multiple orthologs of succinate semialdehyde dehydrogenase (gabD) that may compete with 4HB synthesis flux in H. bluephagenesis. Accordingly, combinatory gene-knockout strains were constructed and characterized, through which the molar fraction of 4HB was increased by 24-fold in shake flask studies. The best-performing strain was grown on glucose as the single carbon source for 60 h under non-sterile conditions in a 7-L bioreactor, reaching 26.3 g/L of dry cell mass containing 60.5% P(3HB-co-17.04 mol%4HB). Besides, 4HB molar fraction in the copolymer can be tuned from 13 mol% to 25 mol% by controlling the residual glucose concentration in the cultures. This is the first study to achieve the production of P(3HB-co-4HB) from only glucose using Halomonas.
聚(3-羟基丁酸酯-共-4-羟基丁酸酯)[P(3HB-co-4HB)]是最有前途的生物材料之一,有望在广泛的场景中使用。然而,其大规模生产仍受到高成本的限制。在这里,我们报告了 Halomonas bluephagenesis 的工程改造,该工程将其作为一种低成本平台,用于从葡萄糖非无菌和连续发酵生产 P(3HB-co-4HB)。构建了两条相互关联的 4-羟基丁酸(4HB)生物合成途径,通过与 3-羟基丁酸(3HB)途径协同作用,保证 4HB 单体供应用于 P(3HB-co-4HB)合成。有趣的是,在摇瓶研究中仅获得共聚物中 0.17 mol%的 4HB。使用结构上相关的碳源进行途径调试,将故障定位为 4HB 积累不足。进一步的全基因组测序和比较基因组分析确定了 H. bluephagenesis 中多个琥珀酸半醛脱氢酶(gabD)的同源物,这些同源物可能与 4HB 合成通量竞争。因此,构建并表征了组合基因敲除菌株,通过该菌株在摇瓶研究中 4HB 的摩尔分数增加了 24 倍。在非无菌条件下,在 7-L 生物反应器中,使用葡萄糖作为唯一碳源,最佳表现菌株生长 60 h,达到 26.3 g/L 的干细胞质量,其中含有 60.5%的 P(3HB-co-17.04 mol%4HB)。此外,通过控制培养物中残留葡萄糖浓度,可以将共聚物中 4HB 的摩尔分数从 13 mol%调至 25 mol%。这是首次使用 Halomonas 仅从葡萄糖生产 P(3HB-co-4HB)的研究。