• 文献检索
  • 文档翻译
  • 深度研究
  • 学术资讯
  • Suppr Zotero 插件Zotero 插件
  • 邀请有礼
  • 套餐&价格
  • 历史记录
应用&插件
Suppr Zotero 插件Zotero 插件浏览器插件Mac 客户端Windows 客户端微信小程序
定价
高级版会员购买积分包购买API积分包
服务
文献检索文档翻译深度研究API 文档MCP 服务
关于我们
关于 Suppr公司介绍联系我们用户协议隐私条款
关注我们

Suppr 超能文献

核心技术专利:CN118964589B侵权必究
粤ICP备2023148730 号-1Suppr @ 2026

文献检索

告别复杂PubMed语法,用中文像聊天一样搜索,搜遍4000万医学文献。AI智能推荐,让科研检索更轻松。

立即免费搜索

文件翻译

保留排版,准确专业,支持PDF/Word/PPT等文件格式,支持 12+语言互译。

免费翻译文档

深度研究

AI帮你快速写综述,25分钟生成高质量综述,智能提取关键信息,辅助科研写作。

立即免费体验

卤代芳烃π相互作用调节抑制剂的驻留时间。

Halogen-Aromatic π Interactions Modulate Inhibitor Residence Times.

作者信息

Heroven Christina, Georgi Victoria, Ganotra Gaurav K, Brennan Paul, Wolfreys Finn, Wade Rebecca C, Fernández-Montalván Amaury E, Chaikuad Apirat, Knapp Stefan

机构信息

Nuffield Department of Clinical Medicine, Structural Genomics Consortium, University of Oxford, Oxford, OX3 7DQ, UK.

Bayer AG, Drug Discovery, Pharmaceuticals, Lead Discovery Berlin, 13353, Berlin, Germany.

出版信息

Angew Chem Int Ed Engl. 2018 Jun 11;57(24):7220-7224. doi: 10.1002/anie.201801666. Epub 2018 May 9.

DOI:10.1002/anie.201801666
PMID:29601130
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC7615044/
Abstract

Prolonged drug residence times may result in longer-lasting drug efficacy, improved pharmacodynamic properties, and "kinetic selectivity" over off-targets with high drug dissociation rates. However, few strategies have been elaborated to rationally modulate drug residence time and thereby to integrate this key property into the drug development process. Herein, we show that the interaction between a halogen moiety on an inhibitor and an aromatic residue in the target protein can significantly increase inhibitor residence time. By using the interaction of the serine/threonine kinase haspin with 5-iodotubercidin (5-iTU) derivatives as a model for an archetypal active-state (type I) kinase-inhibitor binding mode, we demonstrate that inhibitor residence times markedly increase with the size and polarizability of the halogen atom. The halogen-aromatic π interactions in the haspin-inhibitor complexes were characterized by means of kinetic, thermodynamic, and structural measurements along with binding-energy calculations.

摘要

延长药物驻留时间可能会导致更持久的药效、改善的药效学性质以及对具有高药物解离速率的脱靶靶点的“动力学选择性”。然而,很少有策略被详细阐述来合理调节药物驻留时间,从而将这一关键性质整合到药物开发过程中。在此,我们表明抑制剂上的卤素部分与靶蛋白中的芳香族残基之间的相互作用可显著增加抑制剂的驻留时间。通过使用丝氨酸/苏氨酸激酶哈斯平与5-碘杀结核菌素(5-iTU)衍生物的相互作用作为典型活性状态(I型)激酶-抑制剂结合模式的模型,我们证明抑制剂的驻留时间随着卤素原子的大小和极化率而显著增加。通过动力学、热力学和结构测量以及结合能计算对哈斯平-抑制剂复合物中的卤素-芳香族π相互作用进行了表征。

相似文献

1
Halogen-Aromatic π Interactions Modulate Inhibitor Residence Times.卤代芳烃π相互作用调节抑制剂的驻留时间。
Angew Chem Int Ed Engl. 2018 Jun 11;57(24):7220-7224. doi: 10.1002/anie.201801666. Epub 2018 May 9.
2
Exploring the thermodynamic, kinetic and inhibitory mechanisms of 5-iTU targeting mitotic kinase haspin by integrated molecular dynamics.通过整合分子动力学探索5-iTU靶向有丝分裂激酶Haspin的热力学、动力学和抑制机制。
Phys Chem Chem Phys. 2021 Sep 14;23(34):18404-18413. doi: 10.1039/d1cp02783b. Epub 2021 Aug 20.
3
Halogen Bonding in Haspin-Halogenated Tubercidin Complexes: Molecular Dynamics and Quantum Chemical Calculations.卤键在 Haspin-卤代胸苷复合物中的作用:分子动力学和量子化学计算。
Molecules. 2022 Jan 21;27(3):706. doi: 10.3390/molecules27030706.
4
Slowly on, Slowly off: Bisubstrate-Analogue Conjugates of 5-Iodotubercidin and Histone H3 Peptide Targeting Protein Kinase Haspin.缓慢开启,缓慢关闭:5-碘结核菌素与靶向蛋白激酶Haspin的组蛋白H3肽的双底物类似物缀合物。
Chembiochem. 2017 Apr 18;18(8):790-798. doi: 10.1002/cbic.201600697. Epub 2017 Mar 21.
5
Haspin-dependent and independent effects of the kinase inhibitor 5-Iodotubercidin on self-renewal and differentiation.依赖于 Haspin 和不依赖于 Haspin 的激酶抑制剂 5-碘尿苷对自我更新和分化的影响。
Sci Rep. 2020 Jan 14;10(1):232. doi: 10.1038/s41598-019-54350-4.
6
Halogen bonds involved in binding of halogenated ligands by protein kinases.蛋白质激酶与卤化配体结合中涉及的卤键。
Acta Biochim Pol. 2016;63(2):203-14. doi: 10.18388/abp.2015_1106. Epub 2016 Apr 20.
7
Structure, Roles and Inhibitors of a Mitotic Protein Kinase Haspin.有丝分裂蛋白激酶Haspin的结构、作用及抑制剂
Curr Med Chem. 2017;24(21):2276-2293. doi: 10.2174/0929867324666170414155520.
8
Crystal engineering for topochemical polymerization of muconic esters using halogen-halogen and CH/pi interactions as weak intermolecular interactions.利用卤素-卤素和CH/π相互作用作为弱分子间相互作用进行粘康酸酯的拓扑化学聚合的晶体工程
J Am Chem Soc. 2002 Jul 31;124(30):8891-902. doi: 10.1021/ja0205333.
9
Aromatic Rings as Molecular Determinants for the Molecular Recognition of Protein Kinase Inhibitors.芳香环作为蛋白激酶抑制剂分子识别的分子决定因素。
Molecules. 2021 Mar 22;26(6):1776. doi: 10.3390/molecules26061776.
10
Structure-based improvement of the binding affinity and recognition specificity of peptide competitors to target pediatric IL-5R/IL-5 interaction by gluing halogen bonds at their complex interface.通过在肽竞争剂与靶标小儿白细胞介素-5受体/白细胞介素-5相互作用的复合物界面处黏合卤键,基于结构提高肽竞争剂的结合亲和力和识别特异性。
J Mol Recognit. 2024 Mar;37(2):e3070. doi: 10.1002/jmr.3070. Epub 2023 Nov 21.

引用本文的文献

1
Stable H-bond networks are crucial for selective CLK1 inhibition: a computational perspective.从计算角度看,稳定的氢键网络对选择性抑制CLK1至关重要。
Front Chem. 2025 Jun 17;13:1582515. doi: 10.3389/fchem.2025.1582515. eCollection 2025.
2
Covalent Targeting Leads to the Development of a LIMK1 Isoform-Selective Inhibitor.共价靶向促成了一种 LIMK1 亚型选择性抑制剂的研发。
J Med Chem. 2025 Jul 24;68(14):15026-15049. doi: 10.1021/acs.jmedchem.5c01204. Epub 2025 Jul 2.
3
Comparison of QM Methods for the Evaluation of Halogen-π Interactions for Large-Scale Data Generation.

本文引用的文献

1
The Cysteinome of Protein Kinases as a Target in Drug Development.蛋白激酶半胱氨酸组作为药物开发的靶点。
Angew Chem Int Ed Engl. 2018 Apr 9;57(16):4372-4385. doi: 10.1002/anie.201707875. Epub 2018 Feb 2.
2
Compound Selectivity and Target Residence Time of Kinase Inhibitors Studied with Surface Plasmon Resonance.用表面等离子体共振研究激酶抑制剂的化合物选择性和靶点驻留时间
J Mol Biol. 2017 Feb 17;429(4):574-586. doi: 10.1016/j.jmb.2016.12.019. Epub 2016 Dec 30.
3
Selective JAK3 Inhibitors with a Covalent Reversible Binding Mode Targeting a New Induced Fit Binding Pocket.
用于大规模数据生成的卤素-π相互作用评估的量子力学方法比较
J Chem Theory Comput. 2025 Jun 24;21(12):6174-6183. doi: 10.1021/acs.jctc.5c00456. Epub 2025 Jun 9.
4
Synthesis of Differentially Halogenated Lissoclimide Analogues To Probe Ribosome E-Site Binding.用于探究核糖体E位点结合的不同卤代利斯考利米德类似物的合成。
ACS Chem Biol. 2025 Apr 18;20(4):858-869. doi: 10.1021/acschembio.4c00825. Epub 2025 Mar 22.
5
A novel imatinib analogue inhibitor of chronic myeloid leukaemia: design, synthesis and characterization-explanation of its folded conformation.一种新型慢性髓性白血病伊马替尼类似物抑制剂:设计、合成及其折叠构象的表征解释
R Soc Open Sci. 2025 Jan 29;12(1):241654. doi: 10.1098/rsos.241654. eCollection 2025 Jan.
6
Interplay of halogen bonding and solvation in protein-ligand binding.蛋白质-配体结合中卤键与溶剂化作用的相互影响
iScience. 2024 Mar 29;27(4):109636. doi: 10.1016/j.isci.2024.109636. eCollection 2024 Apr 19.
7
5-Iodotubercidin sensitizes cells to RIPK1-dependent necroptosis by interfering with NFκB signaling.5-碘结核菌素通过干扰NFκB信号通路使细胞对RIPK1依赖性坏死性凋亡敏感。
Cell Death Discov. 2023 Jul 26;9(1):262. doi: 10.1038/s41420-023-01576-x.
8
Structure-affinity and structure-residence time relationships of macrocyclic Gα protein inhibitors.大环Gα蛋白抑制剂的结构-亲和力和结构-驻留时间关系
iScience. 2023 Mar 23;26(4):106492. doi: 10.1016/j.isci.2023.106492. eCollection 2023 Apr 21.
9
Exaptation of Inactivated Host Enzymes for Structural Roles in Orthopoxviruses and Novel Folds of Virus Proteins Revealed by Protein Structure Modeling.已失活宿主酶在正痘病毒中结构功能的适应及通过蛋白结构建模揭示病毒蛋白的新折叠。
mBio. 2023 Apr 25;14(2):e0040823. doi: 10.1128/mbio.00408-23. Epub 2023 Apr 5.
10
Quadruple Target Evaluation of Diversity-Optimized Halogen-Enriched Fragments (HEFLibs) Reveals Substantial Ligand Efficiency for AP2-Associated Protein Kinase 1 (AAK1).多样性优化的富卤素片段(HEFLibs)的四重靶向评估揭示了AP2相关蛋白激酶1(AAK1)的显著配体效率。
Front Chem. 2022 Feb 2;9:815567. doi: 10.3389/fchem.2021.815567. eCollection 2021.
选择性共价可逆结合模式的 JAK3 抑制剂靶向新诱导契合结合口袋。
Cell Chem Biol. 2016 Nov 17;23(11):1335-1340. doi: 10.1016/j.chembiol.2016.10.008. Epub 2016 Nov 10.
4
Conformational Adaption May Explain the Slow Dissociation Kinetics of Roniciclib (BAY 1000394), a Type I CDK Inhibitor with Kinetic Selectivity for CDK2 and CDK9.构象适应性可能解释了洛尼西利(BAY 1000394)的缓慢解离动力学,洛尼西利是一种对CDK2和CDK9具有动力学选择性的I型CDK抑制剂。
ACS Chem Biol. 2016 Jun 17;11(6):1710-9. doi: 10.1021/acschembio.6b00074. Epub 2016 Apr 19.
5
The ins and outs of selective kinase inhibitor development.选择性激酶抑制剂开发的来龙去脉。
Nat Chem Biol. 2015 Nov;11(11):818-21. doi: 10.1038/nchembio.1938.
6
Prolonged and tunable residence time using reversible covalent kinase inhibitors.使用可逆共价激酶抑制剂实现延长且可调节的停留时间。
Nat Chem Biol. 2015 Jul;11(7):525-31. doi: 10.1038/nchembio.1817. Epub 2015 May 25.
7
Biomolecular halogen bonds.生物分子卤键
Top Curr Chem. 2015;358:241-76. doi: 10.1007/128_2014_551.
8
A universal homogeneous assay for high-throughput determination of binding kinetics.一种用于高通量测定结合动力学的通用均相分析方法。
Anal Biochem. 2015 Jan 1;468:42-9. doi: 10.1016/j.ab.2014.09.007. Epub 2014 Sep 18.
9
A unique inhibitor binding site in ERK1/2 is associated with slow binding kinetics.细胞外信号调节激酶1/2(ERK1/2)中一个独特的抑制剂结合位点与缓慢的结合动力学相关。
Nat Chem Biol. 2014 Oct;10(10):853-60. doi: 10.1038/nchembio.1629. Epub 2014 Sep 7.
10
Exploration of type II binding mode: A privileged approach for kinase inhibitor focused drug discovery?探讨 II 型结合模式:激酶抑制剂为重点的药物发现的特权方法?
ACS Chem Biol. 2014 Jun 20;9(6):1230-41. doi: 10.1021/cb500129t. Epub 2014 Apr 29.