用于南非水样噬菌体检测的肠炎沙门氏菌肠炎亚种鼠伤寒血清型菌株WG49和大肠杆菌菌株WG5的全基因组序列。
Whole-Genome Sequence of Salmonella enterica subsp. enterica Serovar Typhimurium Strain WG49 and Escherichia coli Strain WG5 Used in South Africa for Phage Detection in Water Samples.
作者信息
Bothma L, Gonzalez-Ibeas D, Mienie C, Bezuidenhout C C, Adeleke R
机构信息
Unit for Environmental Sciences and Management, North-West University, Potchefstroom, South Africa.
Unit for Environmental Sciences and Management, North-West University, Potchefstroom, South Africa
出版信息
Genome Announc. 2018 Jun 28;6(26):e00372-18. doi: 10.1128/genomeA.00372-18.
Abstract
subsp. serovar Typhimurium WG49 is widely used for enumeration of F-specific RNA (F-RNA) coliphages in water. WG5 is broadly used for the detection and enumeration of somatic coliphages in water samples. We report here the genome sequences of these bacterial strains used in South Africa under ISO methods 10705-1 and 10705-2.
摘要
亚种 鼠伤寒血清型WG49被广泛用于水中F特异性RNA（F-RNA）大肠杆菌噬菌体的计数。WG5广泛用于水样中体细胞大肠杆菌噬菌体的检测和计数。我们在此报告根据ISO方法10705-1和10705-2在南非使用的这些细菌菌株的基因组序列。
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本文引用的文献
1
Enumeration of Somatic and F-RNA Phages as an Indicator of Fecal Contamination in Potable Water from Rural Areas of the North West Province.枚举肠道和 F 噬菌体作为西北地区农村地区饮用水粪便污染的指示物。
Pathogens. 2015 Jul 1;4(3):503-12. doi: 10.3390/pathogens4030503.
2
QUAST: quality assessment tool for genome assemblies.QUAST：基因组组装质量评估工具。
Bioinformatics. 2013 Apr 15;29(8):1072-5. doi: 10.1093/bioinformatics/btt086. Epub 2013 Feb 19.
3
Identification of acquired antimicrobial resistance genes.获得性抗菌耐药基因的鉴定。
J Antimicrob Chemother. 2012 Nov;67(11):2640-4. doi: 10.1093/jac/dks261. Epub 2012 Jul 10.
4
SPAdes: a new genome assembly algorithm and its applications to single-cell sequencing.SPAdes：一种新的基因组组装算法及其在单细胞测序中的应用
J Comput Biol. 2012 May;19(5):455-77. doi: 10.1089/cmb.2012.0021. Epub 2012 Apr 16.
5
PHAST: a fast phage search tool.PHAST：一种快速噬菌体搜索工具。
Nucleic Acids Res. 2011 Jul;39(Web Server issue):W347-52. doi: 10.1093/nar/gkr485. Epub 2011 Jun 14.
6
ARDB--Antibiotic Resistance Genes Database.ARDB——抗生素抗性基因数据库。
Nucleic Acids Res. 2009 Jan;37(Database issue):D443-7. doi: 10.1093/nar/gkn656. Epub 2008 Oct 2.
7
The RAST Server: rapid annotations using subsystems technology.RAST服务器：使用子系统技术进行快速注释。
BMC Genomics. 2008 Feb 8;9:75. doi: 10.1186/1471-2164-9-75.
8
CRISPRFinder: a web tool to identify clustered regularly interspaced short palindromic repeats.CRISPRFinder：一种用于识别成簇规律间隔短回文重复序列的网络工具。
Nucleic Acids Res. 2007 Jul;35(Web Server issue):W52-7. doi: 10.1093/nar/gkm360. Epub 2007 May 30.
9
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J Appl Microbiol. 2000 Jan;88(1):5-21. doi: 10.1046/j.1365-2672.2000.00949.x.
10
A method for the enumeration of male-specific bacteriophages in sewage.一种用于污水中雄性特异性噬菌体计数的方法。
J Appl Bacteriol. 1984 Jun;56(3):439-47. doi: 10.1111/j.1365-2672.1984.tb01372.x.
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