Department of Biology, Faculty of Sciences, Shahid Bahonar University of Kerman, Kerman, Iran.
Department of Biochemistry, Faculty of Biological Science, Tarbiat Modares University, Tehran, Iran.
Int J Biol Macromol. 2018 Dec;120(Pt A):440-448. doi: 10.1016/j.ijbiomac.2018.07.093. Epub 2018 Jul 18.
Organic solvents tend to strip water from protein and thereby disrupt non-covalent forces and decrease enzyme activity and stability. In the present study, we have replaced the surface charge residues in Salinivibrio zinc-metalloprotease (SVP) with hydrophobic ones (E12V, D22I, D24A and D310I) in order to study the effects of surface hydrophobicity with hydrophobic strength of organic solvents. Compared to SVP, D24A exhibited an increase in k and catalytic efficiency and a reduction in thermal inactivation rate in aqueous solvent. Structural studies indicated that the replacement of surface charge residues with hydrophobic residues would not induce conformational changes. C value (the value of solvent concentration where 50% of enzyme activity remains), k (irreversible thermoinactivation rate), and kinetic parameters of E12V, D22I, and D24A were higher in isopropanol and n-propanol. D24A is found to be the most efficient mutant for its remarkable decrease in k value in the presence of isopropanol and n-propanol and a reduction in k value in the presence of dimethylformamide (DMF) and methanol. C value in this variant was increased about 1.2% in DMF, 2% in methanol and isopropanol and 2.5% in n-propanol. Results revealed that, there was a correlation between surface hydrophobicity of SVP and hydrophobic strength of organic solvents.
有机溶剂往往会从蛋白质中去除水分,从而破坏非共价键,降低酶的活性和稳定性。在本研究中,我们用疏水性残基(E12V、D22I、D24A 和 D310I)取代了 Salinivibrio 锌金属蛋白酶(SVP)表面的电荷残基,以研究表面疏水性与有机溶剂疏水性强度的关系。与 SVP 相比,D24A 在水溶剂中表现出增加的 k 和催化效率以及降低的热失活速率。结构研究表明,用疏水性残基取代表面电荷残基不会引起构象变化。C 值(溶剂浓度达到 50%酶活性保留时的数值)、k(不可逆热失活速率)和 E12V、D22I 和 D24A 的动力学参数在异丙醇和正丙醇中的值更高。D24A 是最有效的突变体,因为它在异丙醇和正丙醇中的 k 值显著降低,在二甲基甲酰胺(DMF)和甲醇中的 k 值降低。在 DMF、甲醇和异丙醇中,该变体的 C 值分别增加了约 1.2%、2%和 2.5%,在正丙醇中增加了 2.5%。结果表明,SVP 的表面疏水性与有机溶剂的疏水性强度之间存在相关性。