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来自昆虫博物馆标本的更新世后校准突变率。

A Post-pleistocene Calibrated Mutation Rate from Insect Museum Specimens.

作者信息

Ney Gideon, Frederick Katy, Schul Johannes

机构信息

Department of Biological Sciences, University of Missouri, Columbia, Missouri, United States.

出版信息

PLoS Curr. 2018 Jul 13;10:ecurrents.tol.aba557de56be881793261f7e1565cf35. doi: 10.1371/currents.tol.aba557de56be881793261f7e1565cf35.

DOI:10.1371/currents.tol.aba557de56be881793261f7e1565cf35
PMID:30116653
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC6072552/
Abstract

Quantifying the age of recent species divergence events can be challenging in the absence of calibration points within many groups. The katydid species provides the opportunity to calibrate a post-Pleistocene, taxa specific mutation rate using a known biogeographic event, the Mohawk-Hudson Divide. DNA was extracted from pinned museum specimens of from both Midwest and Atlantic populations and the mitochondrial gene COI sequenced using primers designed from extant specimens. Coalescent analyses using both strict and relaxed molecular clock models were performed in BEAST v1.8.2. The assumption of a strict molecular clock could not be rejected in favor of the relaxed clock model as the distribution of the standard deviation of the clock rate strongly abutted zero. The strict molecular clock model resulted in an intraspecific calculated mutation rate of 14.4-17.3 %/myr, a rate substantially higher than the common rates of sequence evolution observed for insect mitochondrial DNA sequences. The rate, however, aligns closely with mutation rates estimated from other taxa with similarly recent lineage divergence times.

摘要

在许多类群中缺乏校准点的情况下,量化近期物种分化事件的时间可能具有挑战性。这种螽斯物种提供了一个机会,利用一个已知的生物地理事件——莫霍克 - 哈得逊分界线,来校准更新世后的、特定分类群的突变率。从来自中西部和大西洋种群的固定博物馆标本中提取DNA,并使用从现存标本设计的引物对线粒体基因COI进行测序。在BEAST v1.8.2中使用严格和宽松分子钟模型进行了溯祖分析。由于钟速率标准差的分布强烈接近零,因此不能拒绝严格分子钟的假设而支持宽松钟模型。严格分子钟模型得出种内计算的突变率为14.4 - 17.3%/百万年,该速率大大高于昆虫线粒体DNA序列观察到的常见序列进化速率。然而,该速率与从其他具有类似近期谱系分化时间的分类群估计的突变率密切一致。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/df7f/6072552/93a9ce72393c/Appendix-Fig-1.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/df7f/6072552/3aff42ded7b4/Fig-1.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/df7f/6072552/897d5007fd9f/Con-tree.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/df7f/6072552/bfeb79b7f671/standard-deviation.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/df7f/6072552/92d7065fe348/Untitled.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/df7f/6072552/93a9ce72393c/Appendix-Fig-1.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/df7f/6072552/3aff42ded7b4/Fig-1.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/df7f/6072552/897d5007fd9f/Con-tree.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/df7f/6072552/bfeb79b7f671/standard-deviation.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/df7f/6072552/92d7065fe348/Untitled.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/df7f/6072552/93a9ce72393c/Appendix-Fig-1.jpg

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