Elmer-Dixon Margaret M, Bowler Bruce E
Department of Chemistry and Biochemistry, Center for Bimolecular Structure and Dynamics , University of Montana , Missoula , Montana 59812 , United States.
Biochemistry. 2018 Oct 2;57(39):5683-5695. doi: 10.1021/acs.biochem.8b00704. Epub 2018 Sep 17.
Cytochrome c binds to cardiolipin (CL) on the inner mitochondrial membrane during the initial stages of apoptosis where it oxidizes CL, promoting its release into the cytoplasm where it initiates apoptosis. Previous work has identified interaction sites on cytochrome c involved in the cytochrome c-CL interaction. The contributions of the lysines attributed to site A, the anionic site, are studied here to elucidate the relative importance of each for electrostatic interaction of cytochrome c with CL at pH 8, conditions where site A is dominant. A set of single, double, and quadruple lysine to alanine variants of yeast iso-1-cytochrome c, at sequence positions 72, 73, 86, and 87, show that all contribute to the site A-mediated interaction with CL. All variants experience two sequential structural rearrangements as the lipid to protein ratio (LPR) increases. At a low LPR near 10, all variants undergo a small heme-centered structural change detected by Soret circular dichroism. At higher LPRs ranging from 22 to 34, all variants partially unfold as detected by Trp59 emission. The robustness of the mechanism of interaction to sequential neutralization of the four lysines assigned to site A demonstrates that site A is more extensive than previously supposed. The nature of both structural rearrangements also depends on which lysines constitute site A. The peroxidase activity of cytochrome c in the early stages of apoptosis depends on the nature of structural rearrangement near the heme. Thus, the lysines that comprise site A may have evolved to optimize the peroxidase signaling switch.
在细胞凋亡的初始阶段,细胞色素c与线粒体内膜上的心磷脂(CL)结合,在此过程中它氧化CL,促使其释放到细胞质中并引发细胞凋亡。先前的研究已经确定了细胞色素c上参与细胞色素c - CL相互作用的位点。本文研究了位于阴离子位点A的赖氨酸的作用,以阐明在pH 8(此时位点A起主导作用)条件下,每个赖氨酸对于细胞色素c与CL静电相互作用的相对重要性。一组酵母同工酶-1-细胞色素c在序列位置72、73、86和87处的单、双和四倍赖氨酸到丙氨酸的变体表明,所有这些赖氨酸都有助于位点A介导的与CL的相互作用。随着脂质与蛋白质比例(LPR)的增加,所有变体都经历了两个连续的结构重排。在接近10的低LPR时,所有变体都经历了一个由Soret圆二色性检测到的以血红素为中心的小结构变化。在22至34的较高LPR范围内,所有变体都如由色氨酸59发射检测到的那样部分展开。对位点A的四个赖氨酸进行连续中和时,相互作用机制的稳健性表明位点A比先前认为的更广泛。两种结构重排的性质也取决于哪些赖氨酸构成位点A。细胞色素c在细胞凋亡早期的过氧化物酶活性取决于血红素附近结构重排的性质。因此,构成位点A的赖氨酸可能已经进化以优化过氧化物酶信号开关。