Tao Junjie, Wu Han, Li Zhangyun, Huang Chunhui, Xu Xiaobiao
College of Agronomy, Jiangxi Agricultural University, Nanchang, China.
Institute of Kiwifruit, Jiangxi Agricultural University, Nanchang, China.
Front Plant Sci. 2018 Sep 4;9:1293. doi: 10.3389/fpls.2018.01293. eCollection 2018.
The widespread ascorbic acid (AsA) plays a vital role in plant development and abiotic stress tolerance, but AsA concentration varies greatly among different plants. GDP-D-mannose epimerase (GME), which catalyzes GDP-D-mannose to GDP-L-galactose or GDP-L-gulose, is a key enzyme in plant AsA biosynthesis pathway. Functions and expression patterns of have been well studied in previous works, however, little information is known about the evolutionary patterns of the gene. In this study, gene structure, corresponding conserved protein motifs and evolutionary relationships were systematically analyzed. A total of 111 gene sequences were retrieved from 59 plant genomes, which representing almost all the major lineages of Viridiplantae: dicotyledons, monocotyledons, gymnosperms, pteridophytes, bryophytes, and chlorophytes. Results showed that homologs of were widely present in Viridiplantae. gene structures were conservative in higher plants, while varied greatly in the basal subgroups of the phylogeny including lycophytes, bryophytes, and chlorophytes, suggesting gene structure might have undergone severe differentiation at lower plant and then gradually fixed as plant evolution. The basic motifs of GME were strongly conserved throughout Viridiplantae, suggesting the conserved function of the protein. Molecular evolution analysis showed that strong purifying selection was the predominant force in the evolution of . A few branches and sites under episodic diversifying selection were identified and most of the branches located in the subgroup of chlorphytes, indicating episodic diversifying selection at a few branches and sites may play a role in the evolution of and diversifying selection may have occurred at the early stage of Viridiplantae. Our results provide novel insights into functional conservation and the evolution of .
广泛存在的抗坏血酸(AsA)在植物发育和非生物胁迫耐受性中起着至关重要的作用,但不同植物中的AsA浓度差异很大。GDP-D-甘露糖差向异构酶(GME)催化GDP-D-甘露糖生成GDP-L-半乳糖或GDP-L-古洛糖,是植物AsA生物合成途径中的关键酶。此前的研究已经对其功能和表达模式进行了深入研究,然而,关于该基因的进化模式却知之甚少。在本研究中,我们系统地分析了GME基因结构、相应的保守蛋白基序和进化关系。从59个植物基因组中检索到了总共111个GME基因序列,这些基因组几乎代表了绿藻门的所有主要谱系:双子叶植物、单子叶植物、裸子植物、蕨类植物、苔藓植物和绿藻。结果表明,GME的同源物广泛存在于绿藻门中。GME基因结构在高等植物中较为保守,而在系统发育的基部亚群(包括石松类植物、苔藓植物和绿藻)中差异很大,这表明GME基因结构可能在低等植物中经历了严重分化,然后随着植物进化逐渐固定下来。GME的基本基序在整个绿藻门中高度保守,表明该蛋白具有保守功能。分子进化分析表明,强烈的纯化选择是GME进化的主要力量。我们鉴定出了一些经历间歇性多样化选择的分支和位点,其中大多数分支位于绿藻亚群中,这表明在一些分支和位点上的间歇性多样化选择可能在GME的进化中发挥作用,并且多样化选择可能发生在绿藻门的早期阶段。我们的研究结果为GME的功能保守性和进化提供了新的见解。