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存在孪晶、部分无序现象并表现出多个晶格的大分子晶体学病理性数据,用于测试数据处理和精修工具。

Pathological macromolecular crystallographic data affected by twinning, partial-disorder and exhibiting multiple lattices for testing of data processing and refinement tools.

机构信息

Astbury Centre for Structural Molecular Biology, University of Leeds, Leeds, LS2 9JT, UK.

Biochemistry Department, Oxford University, South Parks Road, Oxford, OX1 1HY, UK.

出版信息

Sci Rep. 2018 Oct 5;8(1):14876. doi: 10.1038/s41598-018-32962-6.

Abstract

Twinning is a crystal growth anomaly, which has posed a challenge in macromolecular crystallography (MX) since the earliest days. Many approaches have been used to treat twinned data in order to extract structural information. However, in most cases it is usually simpler to rescreen for new crystallization conditions that yield an untwinned crystal form or, if possible, collect data from non-twinned parts of the crystal. Here, we report 11 structures of engineered variants of the E. coli enzyme N-acetyl-neuraminic lyase which, despite twinning and incommensurate modulation, have been successfully indexed, solved and deposited. These structures span a resolution range of 1.45-2.30 Å, which is unusually high for datasets presenting such lattice disorders in MX and therefore these data provide an excellent test set for improving and challenging MX data processing programs.

摘要

孪生是一种晶体生长异常,自早期以来一直给大分子晶体学(MX)带来挑战。已经使用了许多方法来处理孪晶数据,以提取结构信息。然而,在大多数情况下,通常更简单的方法是重新筛选新的结晶条件,以产生无孪晶的晶体形式,或者如果可能的话,从晶体的无孪晶部分收集数据。在这里,我们报告了 11 种大肠杆菌酶 N-乙酰神经氨酸裂解酶的工程变体结构,尽管存在孪晶和非共形调制,但这些结构仍已成功索引、解决并保存。这些结构的分辨率范围为 1.45-2.30Å,对于在 MX 中呈现这种晶格无序的数据集来说,这是非常高的,因此这些数据为改进和挑战 MX 数据处理程序提供了极好的测试集。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/0c27/6173773/cb4c9ca22499/41598_2018_32962_Fig1_HTML.jpg

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