Department of Orthopaedics, Jining NO.1 People's Hospital, China; Department of Orthopaedics, Sandong University Qilu Hospital, China.
Department of Orthopaedics, Sandong University Qilu Hospital, China.
Immunol Lett. 2018 Dec;204:60-66. doi: 10.1016/j.imlet.2018.03.016. Epub 2018 Oct 12.
Ankylosing spondylitis (AS) is a common form of seronegative spondyloarthritis. We had identified differentially expressed genes (DEGs) in AS based on our previous RNA-sequencing results. Our study aimed to identify key genes in AS by integrated microarray analysis. In this present study, we identified 1328 DEGs between AS and normal control by using integrated analysis of two datasets derived from the Gene Expression Omnibus (GEO) database. Functional annotation of DEGs were performed. Pathways in cancer, Pancreatic cancer and Natural killer cell mediated cytotoxicity were significantly enriched pathways for DEGs. Based on the shared DEGs of AS in both integrated analysis and our previous RNA-sequencing results, we constructed the protein and protein interaction (PPI) network. BIRC2, MAPILC3A and MAGED1 were hub proteins. Validation of gene expression by qRT-PCR were performed and the results were consistent with our integrated analysis generally. Our finding provided new clues for understanding the mechanism of AS.
强直性脊柱炎(AS)是一种常见的血清阴性脊柱关节病。我们基于之前的 RNA 测序结果,鉴定了 AS 中的差异表达基因(DEGs)。本研究旨在通过整合微阵列分析鉴定 AS 中的关键基因。在本研究中,我们通过整合来自基因表达综合数据库(GEO)的两个数据集的分析,确定了 1328 个 AS 与正常对照之间的 DEGs。对 DEGs 进行了功能注释。癌症、胰腺癌和自然杀伤细胞介导的细胞毒性途径是 DEGs 显著富集的途径。基于我们的整合分析和之前的 RNA 测序结果中 AS 的共享 DEGs,我们构建了蛋白质和蛋白质相互作用(PPI)网络。BIRC2、MAPILC3A 和 MAGED1 是枢纽蛋白。通过 qRT-PCR 验证了基因表达,结果与我们的整合分析基本一致。我们的发现为理解 AS 的发病机制提供了新的线索。