Department of Biotechnology, Indian Institute of Technology Roorkee, Roorkee-247667, Uttarakhand, India.
Discipline of Biosciences & Biomedical Engineering, Indian Institute of Technology Indore, Indore-453552, India.
Curr Top Med Chem. 2018;18(20):1769-1791. doi: 10.2174/1568026619666181120142141.
Application of computational tools and techniques has emerged as an invincible instrument to unravel the structure-function relationship and offered better mechanistic insights in the designing and development of new drugs along with the treatment regime. The use of in silico tools equipped modern chemist with armamentarium of extensive methods to meticulously comprehend the structural tenacity of receptor-ligand interactions and their dynamics. In silico methods offers a striking property of being less resource intensive and economically viable as compared to experimental evaluation. These techniques have proved their mettle in the designing of potential lead compounds to combat life-threatening diseases such as AIDS, cancer, tuberculosis, malaria, etc. In the present scenario, computer-aided drug designing has ascertained an essential and indispensable gizmo in therapeutic development. This review will present a brief outline of computational methods used at different facets of drug designing and its latest advancements. The aim of this review article is to briefly highlight the methodologies and techniques used in structure-based/ ligand-based drug designing viz., molecular docking, pharmacophore modeling, density functional theory, protein-hydration and molecular dynamics simulation which helps in better understanding of macromolecular events and complexities.
应用计算工具和技术已经成为揭示结构-功能关系的无敌工具,并为新药设计和开发以及治疗方案提供了更好的机制见解。使用计算机工具为现代化学家提供了广泛的方法,以精心理解受体-配体相互作用的结构强度及其动态。与实验评估相比,计算机方法具有资源消耗少和经济可行的显著特点。这些技术已经在设计对抗艾滋病、癌症、结核病、疟疾等危及生命的疾病的潜在先导化合物方面证明了自己的价值。在当前情况下,计算机辅助药物设计已经成为治疗开发中必不可少的工具。本文将简要概述药物设计不同方面使用的计算方法及其最新进展。本文的目的是简要强调基于结构/基于配体的药物设计中使用的方法和技术,如分子对接、药效团建模、密度泛函理论、蛋白质水合作用和分子动力学模拟,这有助于更好地理解大分子事件和复杂性。