Laboratoire de Cristallographie & RMN biologiques (UMR 8015 CNRS), Paris, France.
CEA, CNRS, IBS, Université Grenoble Alpes, France.
FEBS J. 2019 Mar;286(6):1204-1213. doi: 10.1111/febs.14758. Epub 2019 Feb 5.
Dihydroorotase (DHOase) is involved in the de novo synthesis of pyrimidine in virtually all organisms, and it is usually associated with two other enzymes found in this biosynthetic pathway, carbamylphosphate synthetase and/or aspartate transcarbamylase (ATCase). In the hyperthermophilic bacterium Aquifex aeolicus, ATCase and DHOase are noncovalently associated. Upon dissociation, ATCase keeps its activity entirely while DHOase is totally inactivated. It was previously shown that high pressure fully restores the activity of this isolated DHOase. On the basis of kinetic studies, site-directed mutagenesis and the use of peptides mimicking loop A, a loop that appears to block access to the active site, was proposed that this pressure-induced reactivation was due to the decrease in the volume of the system, -ΔV, resulting from the disruption of known ionic interactions between the loop and the main part of the protein. In this study, this interpretation is more precisely demonstrated by the determination of the crystallographic structure of isolated DHOase under pressure. In addition to the loop displacements, pressure induces a discrete rearrangement of the catalytic site aspartate 305, an effect that might additionally contribute to the reactivation of this enzyme.
二氢乳清酸酶 (DHOase) 参与几乎所有生物体嘧啶的从头合成,通常与该生物合成途径中的另外两种酶,即氨基甲酰磷酸合成酶和/或天冬氨酸转氨甲酰酶 (ATCase) 相关联。在嗜热菌 Aquifex aeolicus 中,ATCase 和 DHOase 是非共价结合的。解离后,ATCase 完全保持其活性,而 DHOase 则完全失活。先前的研究表明,高压可完全恢复分离的 DHOase 的活性。基于动力学研究、定点突变和使用模拟环 A 的肽,提出这种压力诱导的复活动力学是由于系统体积的减少,-ΔV,这是由于环与蛋白质主体之间的已知离子相互作用的破坏所致。在这项研究中,通过确定加压下分离的 DHOase 的晶体结构更精确地证明了这一解释。除了环的位移外,压力还会诱导催化位点天冬氨酸 305 的离散重排,这种效应可能进一步有助于该酶的复活动力学。