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鉴定一个中国多囊肾病家系中的致病突变。

Identification of a pathogenic mutation in a Chinese pedigree with polycystic kidney disease.

机构信息

Laboratory of Medical Genetics, Harbin Medical University, Harbin, Heilongjiang 150081, P.R. China.

In‑Patient Ultrasound Department, The Second Affiliated Hospital of Harbin Medical University, Harbin, Heilongjiang 150086, P.R. China.

出版信息

Mol Med Rep. 2019 Apr;19(4):2671-2679. doi: 10.3892/mmr.2019.9921. Epub 2019 Jan 31.

DOI:10.3892/mmr.2019.9921
PMID:30720121
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC6423614/
Abstract

Polycystic kidney disease (PKD) is a life‑threatening inherited disease with a morbidity of 1:500‑1,000 worldwide. Numerous progressively enlarging cysts are observed in the bilateral kidneys of patients with PKD, inducing structural damage and loss of kidney function. The present study analyzed one family with PKD. Whole exome sequencing of the proband was performed to detect the pathogenic gene present in the family. Candidate gene segments for lineal consanguinity in the family were amplified by nest polymerase chain reaction, followed by Sanger sequencing. One novel duplication variant (NM_001009944.2:c.9359dupA:p.Y3120_E3121delinsX) and one missense mutation (c.G9022A:p.V3008M) were detected in PKD1. Additionally, the pathogenic substitutions in PKD1 published from the dataset were analyzed. Following analysis and confirmation, the duplication variant NM_001009944.2:c.9359dupA:p.Y3120_E3121delinsX in PKD1, within the polycystin‑1, lipoxygenase, α‑toxin domain, was considered to be the pathogenic factor in the examined family with autosomal dominant PKD. Additionally, based on the analysis of 4,805 pathogenic substitutions in PKD1 within various regions, the presence of the missense mutation in the N‑terminal domain of polycystin‑1 may present high pathogenicity in ADPKD.

摘要

多囊肾病(PKD)是一种危及生命的遗传性疾病,全球发病率为 1:500-1,000。PKD 患者的双侧肾脏中可见大量逐渐增大的囊肿,导致结构损伤和肾功能丧失。本研究分析了一个 PKD 家系。对先证者进行全外显子组测序,以检测家系中存在的致病基因。通过巢式聚合酶链反应扩增家系中线性同系血亲的候选基因片段,然后进行 Sanger 测序。在 PKD1 中检测到一个新的重复变异(NM_001009944.2:c.9359dupA:p.Y3120_E3121delinsX)和一个错义突变(c.G9022A:p.V3008M)。此外,还分析了来自数据集的 PKD1 中已发表的致病性替换。经过分析和确认,PKD1 中的重复变异 NM_001009944.2:c.9359dupA:p.Y3120_E3121delinsX,位于多囊蛋白 1、脂氧合酶、α-毒素结构域内,被认为是该常染色体显性遗传 PKD 家系的致病因素。此外,基于对 PKD1 中不同区域的 4805 个致病性替换的分析,多囊蛋白 1 N-末端结构域中的错义突变可能在 ADPKD 中具有较高的致病性。

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The heteromeric PC-1/PC-2 polycystin complex is activated by the PC-1 N-terminus.异型 PC-1/PC-2 多囊蛋白复合物被 PC-1 N 端激活。

本文引用的文献

1
Population data improves variant interpretation in autosomal dominant polycystic kidney disease.人群数据改善常染色体显性遗传性多囊肾病的变异解读。
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A Novel PKD1 Mutation Associated With Autosomal Dominant Kidney Disease and Cerebral Cavernous Malformation.一种与常染色体显性遗传性肾病和脑海绵状血管畸形相关的新型PKD1突变
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Disease causing property analyzation of variants in 12 Chinese families with polycystic kidney disease.12 个多囊肾病家系变异的致病特性分析。
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Use of targeted sequence capture and high-throughput sequencing identifies a novel PKD1 mutation involved in adult polycystic kidney disease.使用靶向序列捕获和高通量测序鉴定出一种与成人多囊肾病相关的新型PKD1突变。
Gene. 2017 Nov 15;634:1-4. doi: 10.1016/j.gene.2017.08.040. Epub 2017 Sep 1.
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Autosomal Recessive Polycystic Kidney Disease.常染色体隐性多囊肾病
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Polycystic Kidney Disease.多囊肾病
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On the Many Actions of Ouabain: Pro-Cystogenic Effects in Autosomal Dominant Polycystic Kidney Disease.哇巴因的多种作用:对常染色体显性多囊肾病的促囊肿形成作用
Molecules. 2017 May 3;22(5):729. doi: 10.3390/molecules22050729.
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Functional alterations due to amino acid changes and evolutionary comparative analysis of ARPKD and ADPKD genes.因氨基酸变化导致的功能改变以及常染色体隐性多囊肾病和常染色体显性多囊肾病基因的进化比较分析
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Technical Evaluation: Identification of Pathogenic Mutations in PKD1 and PKD2 in Patients with Autosomal Dominant Polycystic Kidney Disease by Next-Generation Sequencing and Use of a Comprehensive New Classification System.技术评估:通过下一代测序和使用综合新分类系统鉴定常染色体显性多囊肾病患者中PKD1和PKD2的致病突变
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Genetic Mechanisms of ADPKD.常染色体显性多囊肾病的遗传机制
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