Qin Y, Zhang Z, Qiao Z, Qiao Q, Zhang D, Tian Y, Wang S
Institute of Plant Protection, Henan Academy of Agricultural Sciences and Henan Key Laboratory of Crop Pest Control and IPM Key Laboratory in Southern Part of North China for Ministry of Agriculture, Zhengzhou, 450002, China.
Plant Dis. 2013 Oct;97(10):1388. doi: 10.1094/PDIS-10-12-0967-PDN.
Begomoviruses infecting sweet potato (Ipomoea batatas) are phylogenetically distinct from other members of the genus Begomovirus, and have been named "sweepoviruses" (1). Sweepoviruses cause sweet potato yield losses and cultivar decline, and have been found in China (1,3). In 2011, a survey was conducted to determine the incidence, genetic diversity, and distribution of sweepoviruses in China. Thirty sweet potato cuttings showing upward leaf curl, leaf roll, chlorosis, and stunting were collected from fields in Jiangsu, Guangxi, Guizhou, Shanxi, Henan, and Hebei Provinces. Five-leaf growth stage I. setosa plants were inoculated by side-grafting with scions from these samples, and grown in an insect-proof greenhouse in 20-cm-diameter clay pots. Each sample was grafted onto three replicate plants. Healthy, non-grafted I. setosa plants were used as the negative control treatment. Total nucleic acids were extracted from 100 mg fresh leaves harvested 30 days post-inoculation (dpi) from symptomatic and negative control plants using the Universal Genomic DNA Extraction Kit (TaKaRa, Dalian, China). Universal primers for amplification of Geminiviruses (BM-V [5'-KSGGGTCGACGTCATCAATGACGTTRTAC-3'] and BM-C [5'-AARGAATTCATKGGGGCCCARARRGACTGGC-3']) (2) were used to amplify the begomovirus A component by PCR assay. A DNA fragment of the expected size (2.8 kb) was obtained from grafted leaf samples of the Hebei Province plant, and was cloned into the pMD-19T vector (TaKaRa). The recombinant plasmid was transformed into competent cells of Escherichia coli strain JM109, and the inserted fragment sequenced. The nucleotide sequence obtained (GenBank Accession No. JX448368) was 2,785 nt long, and contained two open reading frames (ORFs) in the virion sense, and four ORFs in the complementary sense, similar to other monopartite begomoviruses (1). The sequence was compared with sequences in GenBank using BLAST. The results revealed the greatest nucleotide sequence identity, 90.8%, with that of the Sweet potato leaf curl Georgia virus (SPLCGV) from Georgia, United States (AF326775). The sequence also shared identities of <89% with other sweepoviruses, and was therefore designated SPLCGV-China: Hebei: 2011. Comparison of the complete genome sequence of SPLCGV-China: Hebei: 2011 with SPLCGV revealed an 18 nucleotide insertion between AV-1 and AC-3. The results confirmed that the sweet potato sample from which SPLCGV-China: Hebei: 2011 was obtained was infected with SPLCGV. To our knowledge, this is the first report of the natural occurrence of SPLCGV in China. This study will assist with understanding the presence of this virus and genetic diversity of sweepoviruses in China. References: (1) H. P. Bi and P. Zhang. Arch. Virol. 157:441, 2012. (2) R. W. Briddon and P. G. Markham. Mol. Biotechnol. 1:202, 1994. (3) Y. S. Luan et al. Virus Genes 35:379, 2007.
侵染甘薯(Ipomoea batatas)的菜豆金色花叶病毒属病毒在系统发育上与菜豆金色花叶病毒属的其他成员不同,已被命名为“甘薯病毒”(1)。甘薯病毒会导致甘薯产量损失和品种退化,在中国已被发现(1,3)。2011年,开展了一项调查以确定中国甘薯病毒的发病率、遗传多样性和分布情况。从江苏、广西、贵州、山西、河南和河北省的田间收集了30份表现出叶片向上卷曲、叶卷、褪绿和发育不良的甘薯插条。将处于五叶生长阶段的I. setosa植株与这些样品的接穗进行侧接接种,并种植在防虫温室中直径20厘米的陶土盆中。每个样品嫁接到三株重复植株上。健康的、未嫁接的I. setosa植株用作阴性对照处理。使用通用基因组DNA提取试剂盒(TaKaRa,中国大连)从接种后30天(dpi)采集的有症状植株和阴性对照植株的100毫克鲜叶中提取总核酸。使用双生病毒通用引物(BM-V [5'-KSGGGTCGACGTCATCAATGACGTTRTAC-3']和BM-C [5'-AARGAATTCATKGGGGCCCARARRGACTGGC-3'])(2)通过PCR检测扩增菜豆金色花叶病毒A组分。从河北省植株的嫁接叶片样品中获得了预期大小(2.8 kb)的DNA片段,并将其克隆到pMD-19T载体(TaKaRa)中。将重组质粒转化到大肠杆菌JM109菌株的感受态细胞中,并对插入片段进行测序。获得的核苷酸序列(GenBank登录号JX448368)长度为2785 nt,在病毒链上包含两个开放阅读框(ORF),在互补链上包含四个ORF,与其他单分体菜豆金色花叶病毒相似(1)。使用BLAST将该序列与GenBank中的序列进行比较。结果显示,其与来自美国佐治亚州的甘薯叶卷曲佐治亚病毒(SPLCGV)(AF326775)的核苷酸序列同一性最高,为90.8%。该序列与其他甘薯病毒的同一性也<89%,因此被命名为SPLCGV-中国:河北:2011。将SPLCGV-中国:河北:2011的完整基因组序列与SPLCGV进行比较,发现在AV-1和AC-3之间有18个核苷酸的插入。结果证实,获得SPLCGV-中国:河北:2011的甘薯样品感染了SPLCGV。据我们所知,这是SPLCGV在中国自然发生的首次报道。本研究将有助于了解该病毒在中国的存在情况以及甘薯病毒的遗传多样性。参考文献:(1)H. P. Bi和P. Zhang。Arch. Virol. 157:441, 2012。(2)R. W. Briddon和P. G. Markham。Mol. Biotechnol. 1:202, 1994。(3)Y. S. Luan等人。Virus Genes 35:379, 2007。