Institute of High Technologies, Taras Shevchenko National University of Kyiv, Vul. Volodymyrska 64/13, 01601 Kyiv, Ukraine.
Enamine Ltd., Vul. Chervonotkatska 78, 02094 Kyiv, Ukraine.
Molecules. 2019 Feb 5;24(3):572. doi: 10.3390/molecules24030572.
Unconstrained amides that undergo fast hydrolysis under mild conditions are valuable sources of information about how amide bonds may be activated in enzymatic transformations. We report a compound possessing an unconstrained amide bond surrounded by an amino and a carboxyl group, each mounted in close proximity on a bicyclic scaffold. Fast amide hydrolysis of this model compound was found to depend on the presence of both the amino and carboxyl functions, and to involve a proton transfer in the rate-limiting step. Possible mechanisms for the hydrolytic cleavage and their relevance to peptide bond cleavage catalyzed by natural enzymes are discussed. Experimental observations suggest that the most probable mechanisms of the model compound hydrolysis might include a twisted amide intermediate and a rate-determining proton transfer.
在温和条件下快速水解的无约束酰胺是研究酰胺键在酶转化中如何被激活的有价值的信息来源。我们报告了一种含有无约束酰胺键的化合物,该酰胺键被一个氨基和一个羧基基团包围,每个基团都安装在一个双环支架上。发现这种模型化合物的酰胺快速水解取决于氨基和羧基功能的存在,并涉及限速步骤中的质子转移。讨论了水解裂解的可能机制及其与天然酶催化的肽键裂解的相关性。实验观察表明,模型化合物水解的最可能机制可能包括扭曲的酰胺中间体和决定速率的质子转移。