Kumari S, Decraemer W
Crop Research Institute, Department of Virology, Drnovska 507, 16106 Prague 6, Czech Republic.
Royal Belgian Institute of Natural Sciences, Vautierstraat 29 B-1000 Brussels, Belgium and Ghent University, Ledeganckstraat 35, 9000 Belgium. The work is supported by Project No. MZe-0002700603.
Plant Dis. 2008 Sep;92(9):1370. doi: 10.1094/PDIS-92-9-1370B.
Xiphinema species are migratory ectoparasitic nematodes that feed on an extensive range of hosts and several species are vectors of nepoviruses. These long nematodes are readily distinguished from most other plant parasitic nematodes by a long stylet with forked odontostyle and flanged odontophore. In May of 2005, a sample from the rhizosphere of Carpinus betulus and Acer platanoides in a forest near Silnicna, South Moravia yielded a population of Xiphinema dentatum Sturhan, 1978. X. dentatum previously has been reported to be associated with several forest and grassland species in Germany, the former Yugoslavia, and Slovakia. Specimens were extracted from soil by decanting-sieving. A few female specimens were stored at -20°C in 1 M NaCl, and the rest of the specimens were heat killed, fixed in triethanolamine formalin, and mounted in anhydrous glycerin. In 2007, nematodes from permanent slides were identified by morphological and morphometrical characters (3): female body C shaped in fixed specimens, lip region offset by a depression, reproductive system amphidelphic with the presence of well developed pseudo Z-organ, and tail broadly convex-conoid to regularly hemispherical; main average morphometric of females were body length 3.6 mm, total stylet length 220 μm, vulva position 46%, and tail ratio 0.66. Identification of these nematodes was further verified by sequencing cytochrome oxidase subunit 1 (cox1) of mtDNA and D2/D3 expansion segments of large subunit rDNA. Two individual female specimens from NaCl storage were transferred to 0.5-ml Eppendorf tubes containing 0.25 M NaOH. Total genomic DNA was prepared by a rapid technique (4). The cox1 gene was amplified using forward primer COIF (5'-GAT TTT TTG GKC ATC CWG ARG-3') and reverse primer COIR (5'-CWA CAT AAT AAG TAT CAT G-3') (2). D2/D3 expansion segments of large subunit of rDNA were amplified using forward primer D2A (5'-ACA AGT ACC GTG AGG GAA AGT TG -3') and reverse primer D3B (5'-TCG GAA GGA ACC AGC TAC TA-3') (1). The regions were sequenced in both directions after purification of PCR products from gel slices with a Qiagen gel extraction kit (Qiagen, Hilden, Germany). The sequences of two individual females were identical. The sequences were deposited in GenBank (Accession Nos. EU781537 [cox1] and EU781538 [D2/D3]). The length of cox1 was 393 bp and D2/D3 was 786 bp. The obtained sequences were compared by BLAST in NCBI. The cox1 gene sequence is not available in GenBank for X. dentatum, but the best BLAST hits were logically obtained with Xiphinema species. BLAST results of D2/D3 sequence showed strong similarities (99.6%) with X. dentatum Accession No. AY601627 and only a three nucleotide difference was observed in the beginning of the 5' end. To our knowledge, this is the first report of X. dentatum associated with deciduous forest trees in the Czech Republic. Forests are the main terrestrial ecosystems and rich in species diversity and are of great importance as natural resources. Therefore, information on these plant parasitic nematodes from forests would be useful because they are a component of the continental forest diversity. References: (1) P. De Ley et al. Nematology 2:591, 1999. (2) Y. He et al. J. Mol. Evol. 61:819, 2005. (3) P. A. A. Loof and M. Luc. Syst. Parasitol. 16:35, 1990. (4) J. M. Stanton. Australas. Plant Pathol. 27:112, 1998.
剑线虫属物种是迁移性外寄生线虫,以多种寄主为食,有几种是线虫传多面体病毒的传播介体。这些长线虫很容易与大多数其他植物寄生线虫区分开来,其口针长,具分叉的齿针和带凸缘的齿托。2005年5月,从南摩拉维亚州锡尔尼察附近一片森林中欧洲鹅耳枥和挪威槭的根际采集的一份样本中,发现了一群1978年描述的齿形剑线虫。此前在德国、前南斯拉夫和斯洛伐克,曾报道齿形剑线虫与几种森林和草原物种有关。通过倾析 - 筛分法从土壤中提取标本。一些雌虫标本保存在 -20°C的1 M NaCl中,其余标本经热杀死后,固定在三乙醇胺福尔马林中,并封片于无水甘油中。2007年,通过形态学和形态测量学特征鉴定了永久玻片上的线虫:固定标本中雌虫体呈C形,唇区因凹陷而偏移,生殖系统双雌型,具发育良好的假Z器官,尾部宽凸锥形至规则半球形;雌虫主要平均形态测量值为体长3.6 mm,口针总长220 μm,阴门位置46%,尾比值0.66。通过对线粒体DNA的细胞色素氧化酶亚基1(cox1)和大亚基rDNA的D2/D3扩增片段进行测序,进一步验证了这些线虫的鉴定结果。将保存在NaCl中的两个雌虫个体转移到含有0.25 M NaOH的0.5 ml Eppendorf管中。采用一种快速技术制备总基因组DNA。使用正向引物COIF(5'-GAT TTT TTG GKC ATC CWG ARG-3')和反向引物COIR(5'-CWA CAT AAT AAG TAT CAT G-3')扩增cox1基因。使用正向引物D2A(5'-ACA AGT ACC GTG AGG GAA AGT TG -3')和反向引物D3B(5'-TCG GAA GGA ACC AGC TAC TA-3')扩增rDNA大亚基的D2/D3扩增片段。用Qiagen凝胶提取试剂盒(Qiagen,德国希尔德)从凝胶切片中纯化PCR产物后,对这些区域进行双向测序。两个雌虫个体的序列相同。这些序列已存入GenBank(登录号:EU781537 [cox1]和EU781538 [D2/D3])。cox1的长度为393 bp,D2/D3为786 bp。在NCBI中通过BLAST对获得的序列进行比较。GenBank中没有齿形剑线虫的cox1基因序列,但通过BLAST在逻辑上与剑线虫属物种获得了最佳匹配结果。D2/D3序列的BLAST结果显示与齿形剑线虫登录号AY601627有很强的相似性(99.6%),仅在5'端起始处观察到三个核苷酸差异。据我们所知,这是齿形剑线虫在捷克共和国与落叶林树木相关的首次报道。森林是主要的陆地生态系统,物种多样性丰富,作为自然资源具有重要意义。因此,有关这些来自森林的植物寄生线虫的信息将很有用,因为它们是大陆森林多样性的一个组成部分。参考文献:(1)P. De Ley等人,《线虫学》2:591,1999年。(2)Y. He等人,《分子进化杂志》61:819,2005年。(3)P. A. A. Loof和M. Luc,《系统寄生虫学》16:35,1990年。(4)J. M. Stanton,《澳大利亚植物病理学》27:112,1998年。