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适应度景观上运动的数学建模。

Mathematical modeling of movement on fitness landscapes.

作者信息

Gerald Nishant, Dutta Dibyendu, Brajesh R G, Saini Supreet

机构信息

Department of Chemical Engineering, Indian Institute of Technology Bombay, Powai, Mumbai, 400 076, India.

出版信息

BMC Syst Biol. 2019 Feb 28;13(1):25. doi: 10.1186/s12918-019-0704-0.

Abstract

BACKGROUND

Movement of populations on fitness landscapes has been a problem of interest for a long time. While the subject has been extensively developed theoretically, reconciliation of the theoretical work with recent experimental data has not yet happened. In this work, we develop a computational framework and study evolution of the simplest transcription network between a single regulator, R and a single target protein, T.

RESULTS

Through our simulations, we track evolution of this transcription network and comment on its dynamics and statistics of this movement. Significantly, we report that there exists a critical parameter which controls the ability of a network to reach the global fitness peak on the landscape. This parameter is the fraction of all permissible values of a biochemical parameter that can be accessed from its current value via a single mutation.

CONCLUSIONS

Overall, through this work, we aim to present a general framework for analysis of movement of populations (and particularly regulatory networks) on landscapes.

摘要

背景

长期以来,群体在适应度景观上的移动一直是一个备受关注的问题。虽然该主题在理论上已得到广泛发展,但理论工作与最近的实验数据尚未实现协调统一。在这项工作中,我们开发了一个计算框架,并研究单个调节因子R和单个靶蛋白T之间最简单转录网络的进化。

结果

通过我们的模拟,我们追踪了这个转录网络的进化,并对其动态变化以及这种移动的统计学特征进行了评论。值得注意的是,我们报告存在一个关键参数,该参数控制网络在景观上达到全局适应度峰值的能力。这个参数是生化参数所有允许值的一部分,可通过单个突变从其当前值获取。

结论

总体而言,通过这项工作,我们旨在提出一个用于分析群体(特别是调控网络)在景观上移动的通用框架。

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