Bioinformatics Research Laboratory, Department of Biological Sciences, University of Cyprus, CY, Nicosia, Cyprus.
Glycobiology. 2019 May 1;29(5):385-396. doi: 10.1093/glycob/cwz011.
Despite the controversy regarding the importance of protein N-linked glycosylation in species of the genus Plasmodium, genes potentially encoding core subunits of the oligosaccharyltransferase (OST) complex have already been characterized in completely sequenced genomes of malaria parasites. Nevertheless, the currently established notion is that only four out of eight subunits of the OST complex-which is considered conserved across eukaryotes-are present in Plasmodium species. In this study, we carefully conduct computational analysis to provide unequivocal evidence that all components of the OST complex, with the exception of Swp1/Ribophorin II, can be reliably identified within completely sequenced plasmodial genomes. In fact, most of the subunits currently considered as absent from Plasmodium refer to uncharacterized protein sequences already existing in sequence databases. Interestingly, the main reason why the unusually short Ost4 subunit (36 residues long in yeast) has not been identified so far in plasmodia (and possibly other species) is the failure of gene-prediction pipelines to detect such a short coding sequence. We further identify elusive OST subunits in select protist species with completely sequenced genomes. Thus, our work highlights the necessity of a systematic approach towards the characterization of OST subunits across eukaryotes. This is necessary both for obtaining a concrete picture of the evolution of the OST complex but also for elucidating its possible role in eukaryotic pathogens.
尽管关于蛋白质 N-连接糖基化在疟原虫属物种中的重要性存在争议,但在完全测序的疟原虫基因组中已经鉴定出潜在编码寡糖基转移酶 (OST) 复合物核心亚基的基因。然而,目前的观点是,OST 复合物的八个亚基中只有四个存在于疟原虫物种中,而该复合物被认为在真核生物中是保守的。在这项研究中,我们进行了仔细的计算分析,提供了明确的证据表明,OST 复合物的所有成分,除了 Swp1/Ribophorin II 之外,都可以在完全测序的疟原虫基因组中可靠地识别。事实上,目前被认为不存在于疟原虫中的大多数亚基指的是已经存在于序列数据库中的未鉴定的蛋白质序列。有趣的是,迄今为止在疟原虫(可能还有其他物种)中尚未鉴定出异常短的 Ost4 亚基(在酵母中长 36 个残基)的主要原因是基因预测管道未能检测到如此短的编码序列。我们进一步在具有完全测序基因组的选定原生动物物种中鉴定出难以捉摸的 OST 亚基。因此,我们的工作强调了在真核生物中系统地研究 OST 亚基的必要性。这不仅对于获得 OST 复合物的进化的具体图景是必要的,而且对于阐明其在真核病原体中的可能作用也是必要的。