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从环境测序中揭示出浮游有孔虫的未分配多样性,这些物种是已知但被忽视的物种。

Unassigned diversity of planktonic foraminifera from environmental sequencing revealed as known but neglected species.

机构信息

MARUM-Center for Marine Environmental Sciences, University of Bremen, Bremen, Germany.

出版信息

PLoS One. 2019 Mar 21;14(3):e0213936. doi: 10.1371/journal.pone.0213936. eCollection 2019.

Abstract

Most research on extant planktonic foraminifera has been directed towards larger species (>0.150 mm) which can be easily manipulated, counted and yield enough calcite for geochemical analyses. This has drawn attention towards the macroperforate clade and created an impression of their numerical and ecological dominance. Drawing such conclusions from the study of such "giants" is a dangerous path. There were times in the evolutionary history of planktonic foraminifera when all species were smaller than 0.1 mm and indeed numerous small taxa, mainly from the microperforate clade, have been formally described from the modern plankton. The significance of these small, obscure and neglected species is poorly characterized and their relationship to the newly discovered hyperabundant but uncharacterized lineages of planktonic foraminifera in metabarcoding datasets is unknown. To determine, who is hiding in the metabarcoding datasets, we carried out an extensive sequencing of 18S rDNA targeted at small and obscure species. The sequences of the newly characterized small and obscure taxa match many of the previously uncharacterized lineages found in metabarcoding data. This indicates that most of the modern diversity in planktonic foraminifera has been taxonomically captured, but the role of the small and neglected taxa has been severely underestimated.

摘要

大多数现存浮游有孔虫的研究都集中在较大的物种(>0.150 毫米)上,这些物种易于操作、计数,并且能够产生足够的方解石进行地球化学分析。这引起了人们对大孔型类群的关注,并给人留下了它们在数量和生态上占主导地位的印象。从对这些“巨头”的研究中得出这样的结论是一条危险的道路。在浮游有孔虫的进化历史上,曾经所有的物种都小于 0.1 毫米,而且确实有许多小的分类单元,主要来自微孔型类群,已经从现代浮游生物中正式描述。这些小的、不明显的和被忽视的物种的意义还没有很好地表征,它们与在宏条形码数据集中新发现的丰富但未描述的浮游有孔虫谱系的关系也不清楚。为了确定谁隐藏在宏条形码数据集中,我们对 18S rDNA 进行了广泛的测序,目标是小型和不明显的物种。新描述的小型和不明显的分类单元的序列与宏条形码数据中发现的许多以前未描述的谱系相匹配。这表明浮游有孔虫的现代多样性在很大程度上已经被分类学所捕获,但小的和被忽视的分类单元的作用被严重低估了。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/d6e1/6428320/d8eafa0842dc/pone.0213936.g001.jpg

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