Istituto di ricovero e cura a carattere scientifico (IRCCS) E. Medea, Bioinformatics, Bosisio Parini, Milan, Italy.
Department of Physiopathology and Transplantation, University of Milan, Milan, Italy.
J Infect Dis. 2020 Mar 28;221(8):1286-1294. doi: 10.1093/infdis/jiz227.
Varicella zoster virus (VZV) is the causative agent of chickenpox and shingles. The geographic distribution of VZV clades was taken as evidence that VZV migrated out of Africa with human populations. We show that extant VZV strains most likely originated in Europe and not in Africa. Europe was also identified as the ancestral location for most internal nodes of the VZV phylogeny, including the ancestor of clade 5 strains. We also show that strains from clades 1, 2, 3, and 5 derived a major proportion of their ancestry from each of 4 ancestral populations. Conversely, viruses from other clades displayed variable levels of admixture. Some low-level admixture was also observed for clade 5 genomes, but only for non-African viruses. This pattern indicates that the clade 5 VZV strains do not represent recent introductions from Africa due to migratory fluxes. These data have also relevance for the definition and classification of VZV clades.
水痘带状疱疹病毒(VZV)是水痘和带状疱疹的病原体。VZV 分支的地理分布被认为是 VZV 随人类种群从非洲迁移的证据。我们表明,现存的 VZV 株极有可能起源于欧洲,而不是非洲。欧洲也是 VZV 系统发育树的大多数内部节点的祖先所在地,包括 5 分支株的祖先。我们还表明,来自 1、2、3 和 5 分支的菌株从每个 4 个祖先种群中获得了其大部分祖先的遗传物质。相反,来自其他分支的病毒显示出不同程度的混合。5 分支的基因组也观察到一些低水平的混合,但仅在非非洲病毒中观察到。这种模式表明,5 分支的 VZV 株由于迁移通量,并不代表最近从非洲引入的。这些数据对于 VZV 分支的定义和分类也具有相关性。