Laboratory of Immunogenetics, Institute of Molecular and Cellular Biology SB RAS, Novosibirsk, Russia.
Novosibirsk State University, Russia.
Genome Biol Evol. 2019 Jun 1;11(6):1586-1601. doi: 10.1093/gbe/evz102.
Receptors of the leukocyte receptor cluster (LRC) play a range of important functions in the human immune system. However, the evolution of the LRC remains poorly understood, even in m\ammals not to mention nonmammalian vertebrates. We conducted a comprehensive bioinformatics analysis of the LRC-related genes in the publicly available genomes of six species that represent eutherian, marsupial, and monotreme lineages of mammals. As a result, the LRCs of African elephant and armadillo were characterized, two new genes, IGSF1 and A1BG, were attributed to the LRC of eutherian mammals, the LRC gene content was substantially extended in the short-tailed opossum and Tasmanian devil and, finally, four LRC genes were identified in the platypus genome. These findings have for the first time provided a solid basis for inference of the LRC phylogeny across mammals. Our analysis suggests that the mammalian LRC family likely derived from two ancestral genes, which evolved in a lineage-specific manner by expansion/contraction, extensive exon shuffling, and sequence divergence. The striking structural and functional diversity of eutherian LRC molecules appears largely lineage specific. The only family member retained in all the three mammalian lineages is a collagen-binding receptor OSCAR. Strong sequence conservation of a transmembrane domain known to associate with FcRγ suggests an adaptive role of this domain subtype in the LRC evolution.
白细胞受体簇 (LRC) 的受体在人体免疫系统中发挥着多种重要功能。然而,即使在哺乳动物中,更不用说非哺乳动物的脊椎动物中,LRC 的进化也知之甚少。我们对代表真兽类、有袋类和单孔类哺乳动物谱系的六个物种的公共基因组中的 LRC 相关基因进行了全面的生物信息学分析。结果,我们描绘了非洲象和犰狳的 LRC,将两个新基因 IGSF1 和 A1BG 归因于真兽类哺乳动物的 LRC,短尾负鼠和袋獾的 LRC 基因含量大大扩展,最后在鸭嘴兽基因组中鉴定出四个 LRC 基因。这些发现首次为推断哺乳动物 LRC 的系统发育提供了坚实的基础。我们的分析表明,哺乳动物 LRC 家族可能源自两个祖先基因,它们通过扩张/收缩、广泛的外显子改组和序列分化以谱系特异性的方式进化。真兽类 LRC 分子的惊人结构和功能多样性在很大程度上是谱系特异性的。在所有三个哺乳动物谱系中保留的唯一家族成员是一种胶原结合受体 OSCAR。与 FcRγ 相关的已知跨膜结构域的强烈序列保守性表明该结构域亚型在 LRC 进化中具有适应性作用。