Suppr超能文献

非洲爪蟾卵提取物中质粒结合蛋白的染色质免疫沉淀(ChIP)

Chromatin Immunoprecipitation (ChIP) of Plasmid-Bound Proteins in Xenopus Egg Extracts.

作者信息

Wolfe Kelly B, Long David T

机构信息

Department of Biochemistry and Molecular Biology, Medical University of South Carolina, Charleston, SC, USA.

出版信息

Methods Mol Biol. 2019;1999:173-184. doi: 10.1007/978-1-4939-9500-4_10.

Abstract

Xenopus egg extracts provide a cell-free system to analyze various aspects of chromatin biology. Here we describe a modified method of chromatin immunoprecipitation (ChIP) to detect the interaction of proteins with plasmid DNA incubated in extract. The combination of ChIP and Xenopus egg extracts provides a highly versatile and tractable approach to analyze dynamic protein-DNA interactions with great spatial and temporal detail.

摘要

非洲爪蟾卵提取物提供了一个无细胞系统来分析染色质生物学的各个方面。在这里,我们描述了一种改良的染色质免疫沉淀(ChIP)方法,用于检测蛋白质与提取物中孵育的质粒DNA的相互作用。ChIP与非洲爪蟾卵提取物的结合提供了一种高度通用且易于处理的方法,能够在很大的空间和时间细节上分析动态的蛋白质-DNA相互作用。

相似文献

1
Chromatin Immunoprecipitation (ChIP) of Plasmid-Bound Proteins in Xenopus Egg Extracts.
Methods Mol Biol. 2019;1999:173-184. doi: 10.1007/978-1-4939-9500-4_10.
2
Preparation and use of Xenopus egg extracts to study DNA replication and chromatin associated proteins.
Methods. 2012 Jun;57(2):203-13. doi: 10.1016/j.ymeth.2012.03.029. Epub 2012 Apr 19.
3
MCM interference during licensing of DNA replication in Xenopus egg extracts-Possible Role of a C-terminal region of MCM3.
Cell Cycle. 2018;17(4):492-505. doi: 10.1080/15384101.2017.1415681. Epub 2018 Jan 30.
4
Analysis of histones and chromatin in Xenopus laevis egg and oocyte extracts.
Methods. 2010 May;51(1):3-10. doi: 10.1016/j.ymeth.2009.12.014. Epub 2010 Jan 4.
5
Methods for Studying DNA Single-Strand Break Repair and Signaling in Xenopus laevis Egg Extracts.
Methods Mol Biol. 2019;1999:161-172. doi: 10.1007/978-1-4939-9500-4_9.
6
Chromatin immunoprecipitation for studying transcriptional regulation in Xenopus oocytes and tadpoles.
Methods Mol Biol. 2006;322:165-81. doi: 10.1007/978-1-59745-000-3_12.
7
DNA Damage Response in Xenopus laevis Cell-Free Extracts.
Methods Mol Biol. 2021;2267:103-144. doi: 10.1007/978-1-0716-1217-0_8.
8
Incorporation of DUF/FACT into chromatin enhances the accessibility of nucleosomal DNA.
Biochem Biophys Res Commun. 2003 Mar 28;303(1):8-13. doi: 10.1016/s0006-291x(03)00307-3.
9
Using ChIP-SICAP to Identify Proteins That Co-localize in Chromatin.
Methods Mol Biol. 2021;2351:275-288. doi: 10.1007/978-1-0716-1597-3_15.
10
Chromatin immunoprecipitation analysis of Xenopus embryos.
Methods Mol Biol. 2012;917:279-92. doi: 10.1007/978-1-61779-992-1_17.

引用本文的文献

1
BRD4 promotes resection and homology-directed repair of DNA double-strand breaks.
Nat Commun. 2022 May 31;13(1):3016. doi: 10.1038/s41467-022-30787-6.
2
Regulation of Hepatic Gluconeogenesis by Nuclear Receptor Coactivator 6.
Mol Cells. 2022 Apr 30;45(4):180-192. doi: 10.14348/molcells.2022.2222.
3
BRCA1-BARD1 regulates transcription through BRD4 in Xenopus nucleoplasmic extract.
Nucleic Acids Res. 2021 Apr 6;49(6):3263-3273. doi: 10.1093/nar/gkab111.

本文引用的文献

1
p97 Promotes a Conserved Mechanism of Helicase Unloading during DNA Cross-Link Repair.
Mol Cell Biol. 2016 Nov 14;36(23):2983-2994. doi: 10.1128/MCB.00434-16. Print 2016 Dec 1.
2
BRCA1 promotes unloading of the CMG helicase from a stalled DNA replication fork.
Mol Cell. 2014 Oct 2;56(1):174-85. doi: 10.1016/j.molcel.2014.08.012. Epub 2014 Sep 11.
5
The MCM8-MCM9 complex promotes RAD51 recruitment at DNA damage sites to facilitate homologous recombination.
Mol Cell Biol. 2013 Apr;33(8):1632-44. doi: 10.1128/MCB.01503-12. Epub 2013 Feb 11.
6
Preparation and use of Xenopus egg extracts to study DNA replication and chromatin associated proteins.
Methods. 2012 Jun;57(2):203-13. doi: 10.1016/j.ymeth.2012.03.029. Epub 2012 Apr 19.
7
Mitotic spindle assembly around RCC1-coated beads in Xenopus egg extracts.
PLoS Biol. 2011 Dec;9(12):e1001225. doi: 10.1371/journal.pbio.1001225. Epub 2011 Dec 27.
8
Mechanism of RAD51-dependent DNA interstrand cross-link repair.
Science. 2011 Jul 1;333(6038):84-7. doi: 10.1126/science.1204258.
9
The current state of chromatin immunoprecipitation.
Mol Biotechnol. 2010 May;45(1):87-100. doi: 10.1007/s12033-009-9239-8.
10
DNA replication in nucleus-free Xenopus egg extracts.
Methods Mol Biol. 2009;521:229-52. doi: 10.1007/978-1-60327-815-7_13.

文献AI研究员

20分钟写一篇综述,助力文献阅读效率提升50倍。

立即体验

用中文搜PubMed

大模型驱动的PubMed中文搜索引擎

马上搜索

文档翻译

学术文献翻译模型,支持多种主流文档格式。

立即体验