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奇鹏远球菌 CGMCC 1.12928 全基因组序列解析,揭示其在奇鹏远球菌属物质循环和冷适应机制中的作用。

Complete Genome Sequence of Qipengyuania sediminis CGMCC 1.12928, Shed Light on Its Role in Matter-Cycle and Cold Adaption Mechanism of the Genus Qipengyuania.

机构信息

Key Laboratory of Marine Ecosystem and Biogeochemistry, State Oceanic Administration, Hangzhou, 310012, People's Republic of China.

Second Institute of Oceanography, Ministry of Natural Resources, Hangzhou, 310012, People's Republic of China.

出版信息

Curr Microbiol. 2019 Sep;76(9):988-994. doi: 10.1007/s00284-019-01712-w. Epub 2019 Jun 6.

Abstract

Qipengyuania sediminis CGMCC 1.12928, a family member of Erythrobacteraceae, the class of Alphaproteobacteria, was isolated from a borehole sediment sample collected from Qiangtang Basin in Qinghai-Tibetan Plateau, the largest permafrost in China. Understanding bacterial molecular feature may shed light on the ecological strategy in the extreme environment. Here we describe the complete genome sequence and annotation of strain CGMCC 1.12928, including the complete genome sequence and annotation. The genome of strain CGMCC 1.12928 consist of a single-circular chromosome, comprises 2,416,000 bp with an average G + C content of 66.7 mol%, and contains 2414 genes; including 2367 CDSs, 44 tRNA genes, as well as one operon of 16S-23S-5S rRNA genes. Genomic properties indicated that strain CGMCC 1.12928 has a relatively smaller genome size and higher G + C content within the family Erythrobacteraceae. In addition, genomic analysis revealed its genome contains multiple function genes responsible for nitrogen, sulfur and phosphorus cycles and explained the cold adaption mechanism. Thus, this strain plays an active role in the biogeochemical cycle in cold niche. The whole-genome of this isolate will widen our understanding of the ecological role of the genus Qipengyuania in permafrost.

摘要

栖热袍菌 Qipengyuania sediminis CGMCC 1.12928 是红杆菌科的一个成员,属于 α-变形菌纲,从青藏高原羌塘盆地的一个钻孔沉积物样本中分离得到。了解细菌的分子特征可能有助于揭示其在极端环境中的生态策略。本文描述了 CGMCC 1.12928 菌株的完整基因组序列和注释,包括基因组序列和注释。CGMCC 1.12928 菌株的基因组由一个单链环状染色体组成,大小为 2,416,000 bp,平均 G+C 含量为 66.7 mol%,包含 2,414 个基因;其中包括 2,367 个 CDS、44 个 tRNA 基因以及一个 16S-23S-5S rRNA 基因操纵子。基因组特征表明,CGMCC 1.12928 菌株的基因组相对较小,且在红杆菌科内具有较高的 G+C 含量。此外,基因组分析显示,其基因组包含多个负责氮、硫和磷循环的功能基因,这解释了其对寒冷环境的适应机制。因此,该菌株在寒冷小生境的生物地球化学循环中发挥着积极作用。该分离株的全基因组将加深我们对栖热袍菌属在永久冻土中的生态作用的理解。

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