Allam Loubna, Fatima Ghrifi, Wiame Lakhlili, Hamid El Amri, Azeddine Ibrahim
Biotechnology Laboratory (Medbiotech), BioInova Research center, Rabat Medical and Pharmacy School, MedBiotech Center,Mohammed V University in Rabat, Rabat, 10000, Morroco.
Genetics Laboratory of Royal Gendarmery, Rabat, Morocco. Loubna Allam.
Bioinformation. 2018 Dec 9;14(9):499-503. doi: 10.6026/97320630014499. eCollection 2018.
The abnormal activation of AKT/mTOR signaling pathway and overexpression of LMTK3, are the main factors involved in the generation of drug resistance. Therefore, the use of computer-aided drug design in the inhibitors discovery offers an advantage to provide new candidates for the treatment of this resistance. We realised the virtual screening and molecular docking of AKT1 and LMTK3 proteins by the Dockblaster server. In addition, with abundance of candidates under development for AKT1 kinase, we have also conducted a Quantitative Structure-Activity Relationship (QSAR) study based on these compounds, in order to design more active compounds and predict their activity for development of a new inhibitor of AKT1. QSAR tests were performed for AKT1 using the Partial Least Squares method with a correlation coefficient of R2=0.8062 and a cross-validation of q2=0.6995. This test has selected five compounds as competitive inhibitors-AKT1-ATP with a better biological activities. In parallel the molecular screening has selected five other compounds as competitive ATP-inhibitors of LMTK3. One of them is a common inhibitor with AKT1, and it is marketed as a moderate to severe pain therapy. The ADME predictions confirmed the inhibitors pharmacological activity of these compounds for potential consideration as drug candidates.
AKT/mTOR信号通路的异常激活和LMTK3的过表达是产生耐药性的主要因素。因此,利用计算机辅助药物设计来发现抑制剂,为治疗这种耐药性提供新的候选药物具有优势。我们通过Dockblaster服务器对AKT1和LMTK3蛋白进行了虚拟筛选和分子对接。此外,鉴于有大量针对AKT1激酶的正在开发的候选药物,我们还基于这些化合物进行了定量构效关系(QSAR)研究,以设计出活性更高的化合物,并预测它们作为新型AKT1抑制剂的开发活性。使用偏最小二乘法对AKT1进行QSAR测试,相关系数R2 = 0.8062,交叉验证q2 = 0.6995。该测试筛选出了五种具有更好生物活性的作为AKT1 - ATP竞争性抑制剂的化合物。同时,分子筛选还选出了另外五种作为LMTK3的竞争性ATP抑制剂的化合物。其中一种是与AKT1的共同抑制剂,作为中度至重度疼痛治疗药物上市。ADME预测证实了这些化合物作为候选药物的潜在抑制剂药理活性。