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行为、发育和代谢基因的选择与成功的热带殖民者的向北扩张有关。

Selection at behavioural, developmental and metabolic genes is associated with the northward expansion of a successful tropical colonizer.

机构信息

New York University Abu Dhabi, Abu Dhabi, United Arab Emirates.

出版信息

Mol Ecol. 2019 Aug;28(15):3523-3543. doi: 10.1111/mec.15162. Epub 2019 Jul 30.

Abstract

What makes a species able to colonize novel environments? This question is key to understand the dynamics of adaptive radiations and ecological niche shifts, but the mechanisms that underlie expansion into novel habitats remain poorly understood at a genomic scale. Lizards from the genus Anolis are typically tropical, and the green anole (Anolis carolinensis) constitutes an exception since it expanded into temperate North America from subtropical Florida. Thus, we used the green anole as a model to investigate signatures of selection associated with colonization of a new environment, namely temperate North America. To this end, we analysed 29 whole-genome sequences, covering the entire native range of the species. We used a combination of recent methods to quantify both positive and balancing selection in northern populations, including F outlier methods, machine learning and ancestral recombination graphs. We naively scanned for genes of interest and assessed the overlap between multiple tests. Strikingly, we identified many genes involved in behaviour, suggesting that the recent successful colonization of northern environments may have been linked to behavioural shifts as well as physiological adaptation. Using a candidate genes strategy, we determined that genes involved in response to cold or behaviour displayed more frequently signals of selection, while controlling for local recombination rate, gene clustering and gene length. In addition, we found signatures of balancing selection at immune genes in all investigated genetic groups, but also at genes involved in neuronal and anatomical development.

摘要

是什么使一个物种能够开拓新的环境?这个问题是理解适应性辐射和生态位转移动态的关键,但在基因组水平上,支持扩张到新栖息地的机制仍知之甚少。安乐蜥属的蜥蜴通常是热带的,而绿安乐蜥(Anolis carolinensis)是一个例外,因为它从亚热带的佛罗里达州扩展到了温带的北美洲。因此,我们使用绿安乐蜥作为模型来研究与新环境(即温带北美洲)开拓相关的选择特征。为此,我们分析了 29 个全基因组序列,涵盖了该物种的整个原生范围。我们结合了最近的方法来量化北方种群中的正选择和平衡选择,包括 F 离群值方法、机器学习和祖先重组图谱。我们盲目地扫描了感兴趣的基因,并评估了多个测试之间的重叠。引人注目的是,我们鉴定出了许多参与行为的基因,这表明最近对北方环境的成功开拓可能与行为转变以及生理适应有关。使用候选基因策略,我们确定了参与对寒冷或行为的反应的基因显示出更多选择信号,同时控制了局部重组率、基因聚类和基因长度。此外,我们在所有研究的遗传群体中都发现了免疫基因的平衡选择特征,但也发现了参与神经元和解剖发育的基因的平衡选择特征。

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