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喷气冷却二酮哌嗪肽环酪氨酸-脯氨酸的构象研究。

Conformational Study of the Jet-Cooled Diketopiperazine Peptide Cyclo Tyrosyl-Prolyl.

机构信息

Institut des Sciences Moléculaires d'Orsay (ISMO), CNRS, Université Paris-Sud, Université Paris-Saclay , F-91405 Orsay , France.

出版信息

J Phys Chem B. 2019 Jul 18;123(28):6023-6033. doi: 10.1021/acs.jpcb.9b04529. Epub 2019 Jul 3.

Abstract

The conformational landscape of the diketopiperazine (DKP) dipeptide built on tyrosine and proline, namely, cyclo Tyr-Pro, is studied by combining resonance-enhanced multiphoton ionization, double resonance infrared ultraviolet (IR-UV) spectroscopy, and quantum chemical calculations. Despite the geometrical constraints due the two aliphatic rings, DKP and proline, cyclo Tyr-Pro is a flexible molecule. For both diastereoisomers, cyclo LTyr-LPro and cyclo LTyr-DPro, two structural families coexist under supersonic jet conditions. In the most stable conformation, the aromatic tyrosine substituent is folded over the DKP ring (g geometry of the aromatic ring) as it is in the solid state. The other structure is completely extended (g geometry of the aromatic ring) and resembles that proposed for the vapor phase. IR-UV results are not sufficient for unambiguous assignment of the observed spectra to either folded or extended conformations and the simulation of the vibronic pattern of the S-S transition is necessary. Still, the comparison between IR-UV results and anharmonic calculations allows explanation of the minor structural differences between cyclo LTyr-LPro and cyclo LTyr-DPro in terms of different NH···π and CH···π interactions.

摘要

我们通过共振增强多光子电离、双共振红外-紫外(IR-UV)光谱和量子化学计算相结合,研究了二酮哌嗪(DKP)二肽上构建的酪氨酸和脯氨酸二肽(即环 Tyr-Pro)的构象景观。尽管由于两个脂环(DKP 和脯氨酸)存在几何限制,但 DKP 和脯氨酸的环 Tyr-Pro 是一个灵活的分子。对于两种非对映异构体,环 LTyr-LPro 和环 LTyr-DPro,在超音速射流条件下共存两个结构家族。在最稳定的构象中,芳香族酪氨酸取代基折叠在 DKP 环上(芳香族环的 g 构象),就像在固态中一样。另一种结构完全伸展(芳香族环的 g 构象),类似于在气相中提出的结构。IR-UV 结果不足以将观察到的光谱明确分配给折叠或扩展构象,并且需要模拟 S-S 跃迁的振子模式。尽管如此,IR-UV 结果和非谐计算之间的比较允许根据不同的 NH···π 和 CH···π 相互作用,解释环 LTyr-LPro 和环 LTyr-DPro 之间的微小结构差异。

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