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肿瘤微环境的多尺度生物与物理建模

Multi-scale biological and physical modelling of the tumour micro-environment.

作者信息

Kunz Robert F, Gaskin Byron J, Li Qunhua, Davanloo-Tajbakhsh Sam, Dong Cheng

机构信息

Applied Research Laboratory, Pennsylvania State University, University Park, PA, USA.

Department of Biomedical Engineering, Pennsylvania State University, University Park, PA, USA.

出版信息

Drug Discov Today Dis Models. 2015 Summer;16:7-15. doi: 10.1016/j.ddmod.2015.03.001. Epub 2015 Jul 20.

Abstract

Paced by advances in high performance computing, and algorithms for multi-physics and multi-scale simulation, a number of groups have recently established numerical models of flowing blood systems, where cell-scale interactions are explicitly resolved. To be biologically representative, these models account for some or all of: (1) fluid dynamics of the carrier flow, (2) structural dynamics of the cells and vessel walls, (3) interaction and transport biochemistry, and, (4) methods for scaling to physiologically representative numbers of cells. In this article, our interest is the modelling of the tumour micro-environment. We review the broader area of cell-scale resolving blood flow modelling, while focusing on the particular interactions of tumour cells and white blood cells, known to play an important role in metastasis.

摘要

在高性能计算以及多物理场和多尺度模拟算法的推动下,最近有一些研究团队建立了血流系统的数值模型,其中细胞尺度的相互作用得到了明确解析。为了具有生物学代表性,这些模型考虑了以下部分或全部因素:(1)载体流动的流体动力学,(2)细胞和血管壁的结构动力学,(3)相互作用和传输生物化学,以及(4)按比例放大到具有生理代表性的细胞数量的方法。在本文中,我们关注的是肿瘤微环境的建模。我们回顾了细胞尺度解析血流建模这一更广泛的领域,同时重点关注肿瘤细胞与白细胞之间的特定相互作用,已知这些相互作用在转移过程中起着重要作用。

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本文引用的文献

1
Localized Modeling of Biochemical and Flow Interactions during Cancer Cell Adhesion.
PLoS One. 2015 Sep 14;10(9):e0136926. doi: 10.1371/journal.pone.0136926. eCollection 2015.
2
Numerical simulation of red blood cell behavior in a stenosed arteriole using the immersed boundary-lattice Boltzmann method.
Int J Numer Method Biomed Eng. 2012 Feb;28(2):239-56. doi: 10.1002/cnm.1463. Epub 2011 Aug 23.
3
White blood cell margination in microcirculation.
Soft Matter. 2014 May 7;10(17):2961-70. doi: 10.1039/c3sm52860j.
4
The wall-stress footprint of blood cells flowing in microvessels.
Biophys J. 2014 Feb 4;106(3):752-62. doi: 10.1016/j.bpj.2013.12.020.
5
Where do the platelets go? A simulation study of fully resolved blood flow through aneurysmal vessels.
Interface Focus. 2013 Apr 6;3(2):20120089. doi: 10.1098/rsfs.2012.0089.
6
Computational biorheology of human blood flow in health and disease.
Ann Biomed Eng. 2014 Feb;42(2):368-87. doi: 10.1007/s10439-013-0922-3. Epub 2013 Oct 12.
7
Stretching and relaxation of malaria-infected red blood cells.
Biophys J. 2013 Sep 3;105(5):1103-9. doi: 10.1016/j.bpj.2013.07.008.
8
Analysis of red blood cell deformation under fast shear flow for better estimation of hemolysis.
Int J Numer Method Biomed Eng. 2014 Jan;30(1):42-54. doi: 10.1002/cnm.2587. Epub 2013 Aug 15.
9
Probing vasoocclusion phenomena in sickle cell anemia via mesoscopic simulations.
Proc Natl Acad Sci U S A. 2013 Jul 9;110(28):11326-30. doi: 10.1073/pnas.1221297110. Epub 2013 Jun 24.
10
Multiscale modeling of blood flow: from single cells to blood rheology.
Biomech Model Mechanobiol. 2014 Apr;13(2):239-58. doi: 10.1007/s10237-013-0497-9. Epub 2013 May 14.

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