Dunlap Christopher A
Crop Bioprotection Research Units, National Center for Agricultural Utilization Research, Agricultural Research Service, United States Department of Agriculture, 1815 North University Street, Peoria, IL 61604, USA.
Int J Syst Evol Microbiol. 2019 Sep;69(9):2958-2962. doi: 10.1099/ijsem.0.003577.
The current study evaluates the taxonomic positions of , , and . Phylogenomic and genomic comparisons show the four strains are conspecific based on standard species thresholds for this genus (monophyletic and pairwise average nucleotide identities >96 %). Analysis of the 16S rRNA gene sequences provided in original descriptions with genome-derived 16S rRNA gene sequences from the current study showed significant differences in three of the four strains. Variant analysis of the 16S rRNA gene sequences using the genomic data showed that the 16S rRNA gene copies are polyallelic for these species. Previously reported distinguishing phenotypes were re-examined and the strains show phenotype congruence, with the exception of a few variable traits. Based on the rules of priority, , and are later heterotypic synonyms of
本研究评估了[具体菌株1]、[具体菌株2]、[具体菌株3]和[具体菌株4]的分类地位。系统基因组学和基因组比较表明,根据该属的标准物种阈值(单系性和成对平均核苷酸同一性>96%),这四个菌株属于同一物种。将原始描述中提供的16S rRNA基因序列与本研究中来自基因组的16S rRNA基因序列进行分析,结果显示四个菌株中的三个存在显著差异。利用基因组数据对16S rRNA基因序列进行变异分析表明,这些物种的16S rRNA基因拷贝是多等位基因的。对先前报道的鉴别表型进行了重新检查,结果表明这些菌株表型一致,但有一些可变性状除外。根据优先权规则,[具体菌株2]、[具体菌株3]和[具体菌株4]是[具体菌株1]的晚出异名