Department of Clinical Pharmacy, College of Pharmacy, Najran University, Najran, Saudi Arabia.
Department of Pharmaceutics, SET'S College of Pharmacy, Dharwad, Karnataka, 580002, India.
Med Oncol. 2019 Jul 18;36(9):73. doi: 10.1007/s12032-019-1296-7.
Adrenocortical carcinoma (ACC) is an end-stage hormonal syndrome. Although profound attempts have been made to illuminate the pathogenesis, the molecular mechanisms of ACC remain to be clarified. To identify the important genes in the progression of ACC, microarray datasets GSE19775 was downloaded from the gene expression omnibus database. The differentially-expressed genes (DEGs) were identified, and pathway and GO enrichment analyses were performed. The protein-protein interaction (PPI) network was constructed and the module analysis was performed using the protein interaction network analysis and Cytoscape. Also constructed target genes-miRNA regulatory network and target genes-TF regulatory network. Correlation of the hub genes were analyzed in The Cancer Genome Atlas. The prognostic values of hub genes were further validated by online tool UALCAN. Mutation analysis was done by online tool CBio Cancer Genomics Portal. A total of 884 DEGs were identified, with 441 in up regulation and 443 in down regulation. Pathways in catecholamine biosynthesis, aldosterone synthesis and secretion, pyrimidine deoxyribonucleosides salvage and systemic lupus erythematosus were the most significantly enriched for DEGs (up and down regulated). Blood vessel morphogenesis and cell cycle phase transition were the most significantly enriched term in biological processes, while extracellular matrix and chromosome, centromeric region were in cellular component and heparin binding and protein dimerization activity were in molecular function. Among the PPI networks and its module, target genes-miRNA regulatory network and target genes-TF regulatory network, hub genes were YWHAZ, FN1, GRK5, VCAM1, GATA6, TXNIP, HSPA1A, and F11R. Hub genes such as YWHAZ, STAT1, ICAM1, SH3BP5, CD83, FN1, TK1, HIST1H1C, CABLES1, and MCM3 were associated with poor overall survival, while hub genes such as STAT1, ICAM1, CD83, FN1, TK1, HIST1H1C, and MCM3 were highly expressed in stage 4. In conclusion, DEGs and hub genes diagnosed in this study may deepen our understanding of molecular mechanisms underlying the progression of ACC, and provide important targets for diagnosis and treatment of ACC.
肾上腺皮质癌(ACC)是一种终末期激素综合征。尽管人们已经做出了深刻的努力来阐明其发病机制,但 ACC 的分子机制仍有待阐明。为了确定 ACC 进展过程中的重要基因,从基因表达综合数据库中下载了 microarray 数据集 GSE19775。鉴定差异表达基因(DEGs),并进行通路和 GO 富集分析。构建蛋白质-蛋白质相互作用(PPI)网络,并使用蛋白质相互作用网络分析和 Cytoscape 进行模块分析。还构建了靶基因-miRNA 调控网络和靶基因-TF 调控网络。在癌症基因组图谱中分析了枢纽基因的相关性。通过在线工具 UALCAN 进一步验证了枢纽基因的预后价值。通过在线工具 CBio Cancer Genomics Portal 进行突变分析。共鉴定出 884 个 DEGs,其中 441 个上调,443 个下调。儿茶酚胺生物合成、醛固酮合成和分泌、嘧啶脱氧核苷补救和系统性红斑狼疮途径是 DEGs(上调和下调)最显著富集的途径。生物过程中最显著富集的术语是血管形态发生和细胞周期相位转变,而细胞成分中最显著富集的是细胞外基质和染色体、着丝粒区,分子功能中最显著富集的是肝素结合和蛋白质二聚化活性。在 PPI 网络及其模块、靶基因-miRNA 调控网络和靶基因-TF 调控网络中,枢纽基因是 YWHAZ、FN1、GRK5、VCAM1、GATA6、TXNIP、HSPA1A 和 F11R。YWHAZ、STAT1、ICAM1、SH3BP5、CD83、FN1、TK1、HIST1H1C、CABLES1 和 MCM3 等枢纽基因与总体生存不良相关,而 STAT1、ICAM1、CD83、FN1、TK1、HIST1H1C 和 MCM3 等枢纽基因在 4 期表达水平较高。总之,本研究中鉴定的 DEGs 和枢纽基因可能加深我们对 ACC 进展分子机制的理解,并为 ACC 的诊断和治疗提供重要靶点。
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