Department of Medical Biochemistry and Microbiology, Uppsala University, SE-751 23 Uppsala, Sweden.
National Institute of Aquatic Resources, Technical University of Denmark, 8600 Silkeborg, Denmark.
Proc Natl Acad Sci U S A. 2019 Sep 10;116(37):18473-18478. doi: 10.1073/pnas.1908332116. Epub 2019 Aug 26.
The evolutionary process that occurs when a species colonizes a new environment provides an opportunity to explore the mechanisms underlying genetic adaptation, which is essential knowledge for understanding evolution and the maintenance of biodiversity. Atlantic herring has an estimated total breeding stock of about 1 trillion (10) and has colonized the brackish Baltic Sea within the last 10,000 y. Minute genetic differentiation between Atlantic and Baltic herring populations at selectively neutral loci combined with this rapid adaptation to a new environment facilitated the identification of hundreds of loci underlying ecological adaptation. A major question in the field of evolutionary biology is to what extent such an adaptive process involves selection of novel mutations with large effects or genetic changes at many loci, each with a small effect on phenotype (i.e., selection on standing genetic variation). Here we show that a missense mutation in (Phe261Tyr) is an adaptation to the red-shifted Baltic Sea light environment. The transition from phenylalanine to tyrosine differs only by the presence of a hydroxyl moiety in the latter, but this results in an up to 10-nm red-shifted light absorbance of the receptor. Remarkably, an examination of the rhodopsin sequences from 2,056 species of fish revealed that the same missense mutation has occurred independently and been selected for during at least 20 transitions between light environments across all fish. Our results provide a spectacular example of convergent evolution and how a single amino acid change can have a major effect on ecological adaptation.
当一个物种殖民到一个新环境时,进化过程提供了一个探索遗传适应机制的机会,这是理解进化和生物多样性维护的重要知识。大西洋鲱鱼的总繁殖种群估计约为 1 万亿(10),在过去的 1 万年里已经殖民到了半咸的波罗的海。在选择性中性基因座上,大西洋鲱鱼和波罗的海鲱鱼种群之间存在微小的遗传分化,加上这种对新环境的快速适应,促进了数百个生态适应相关基因座的鉴定。进化生物学领域的一个主要问题是,这种适应性过程在多大程度上涉及到具有大效应的新突变的选择,或者在许多基因座上发生遗传变化,每个基因座对表型的影响都很小(即对现有遗传变异的选择)。在这里,我们表明,在 (Phe261Tyr)中的一个错义突变是对波罗的海红光环境的一种适应。从苯丙氨酸到酪氨酸的转变只在后者中存在一个羟基基团,但这导致了受体的光吸收发生了长达 10nm 的红移。值得注意的是,对来自 2056 种鱼类的视蛋白序列的研究表明,同样的错义突变已经独立发生,并在所有鱼类的至少 20 次光环境之间的转变中被选择。我们的研究结果提供了一个趋同进化的惊人例子,以及单个氨基酸变化如何对生态适应产生重大影响。