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受生物启发的二酮双氧酶酶不寻常的 3 组氨酸基序模型。

Bioinspired models for an unusual 3-histidine motif of diketone dioxygenase enzyme.

机构信息

Bioinorganic Chemistry Laboratory/Physical Chemistry, School of Chemistry, Madurai Kamaraj University, Madurai - 625021, India.

Institute of Chemistry, University of Graz, Schubertstrasse 1, 8010 Graz, Austria.

出版信息

Dalton Trans. 2019 Oct 14;48(38):14326-14336. doi: 10.1039/c9dt02518a. Epub 2019 Sep 5.

DOI:10.1039/c9dt02518a
PMID:31486449
Abstract

Bioinspired models for contrasting the electronic nature of neutral tris-histidine with the anionic 2-histidine-1-carboxylate facial motif and their subsequent impact on catalysis are reported. Herewith, iron(ii) complexes Fe(L)(CHCN)1-3 of tris(2-pyridyl)-based ligands (L) have been synthesized and characterized as accurate structural models for the neutral 3-histidine triad of the enzyme diketone dioxygenase (DKDO). The molecular structure of one of the complexes exhibits octahedral coordination geometry and Fe-N11 bond lengths [1.952(4) to 1.959(4) Å] close to the Fe-N bond distances (1.98 Å) of the 3-His triad in the resting state of the enzyme, as obtained by EXAFS studies. The diketonate substrate-adduct complexes Fe(L)(acac) (R = Me, Ph) of 1-3 have been obtained using Na(acac) in acetonitrile. The Fe redox potentials of the complexes (1.05 to 1.2 V vs. Fc/Fc) and their substrate adducts (1.02 to 1.19 V vs. Fc/Fc) appeared at almost the same redox barrier. All diketonate adducts exhibit two Fe(ii) → acac MLCT bands around 338 to 348 and 430 to 490 nm. Exposure of these adducts to O results in the decay of both MLCT bands with a rate of (k) 5.37 to 9.41 × 10 M s. The k values were concomitantly accelerated 20 to 50 fold by the addition of H (acetic acid), which nicely models the rate enhancement in the enzyme kinetics by the glutamate residue (Glu98). The oxygenation of the phenyl-substituted adducts yielded benzoin and benzoic acid (40% to 71%) as cleavage products in the presence of H ions. Isotope-labeling experiments using O showed 47% incorporation of O in benzoic acid, which reveals that the oxygen originates from dioxygen. Thus, the present model complexes exhibit very similar chemical surroundings to the active site of DKDO and mimic its functions elegantly. On the basis of these results, the C-C bond cleavage reaction mechanism is discussed.

摘要

报道了用于对比中性三组氨酸的电子性质与阴离子 2-组氨酸-1-羧酸面基以及随后对催化影响的仿生模型。在此,合成了基于三(2-吡啶基)的配体(L)的铁(ii)配合物Fe(L)(CHCN)1-3,并将其作为酶二酮酮双加氧酶(DKDO)中中性 3-组氨酸三联体的精确结构模型进行了表征。其中一个配合物的分子结构具有八面体配位几何形状,Fe-N11 键长[1.952(4)至 1.959(4) Å]接近酶处于静止状态时 3-His 三联体的 Fe-N 键距离(1.98 Å),这是通过 EXAFS 研究获得的。使用 Na(acac)在乙腈中获得了 1-3 的二酮底物加合物Fe(L)(acac)(R = Me,Ph)。配合物(1.05 至 1.2 V 相对于 Fc/Fc)和它们的底物加合物(1.02 至 1.19 V 相对于 Fc/Fc)的 Fe 氧化还原电位几乎处于相同的氧化还原势垒。所有二酮加合物均在 338 至 348nm 和 430 至 490nm 处表现出两个 Fe(ii)→acac MLCT 带。将这些加合物暴露于 O 中会导致两个 MLCT 带衰减,速率为(k)5.37 至 9.41×10^-4 M s。当加入 H(乙酸)时,这些 k 值协同加速 20 至 50 倍,这很好地模拟了谷氨酸残基(Glu98)在酶动力学中对速率的增强。在 H 离子存在下,苯取代加合物的氧化生成苯偶姻和苯甲酸(40%至 71%)作为裂解产物。使用 O 的同位素标记实验表明苯甲酸中有 47%的 O 掺入,这表明氧来源于氧气。因此,本模型配合物表现出与 DKDO 活性位点非常相似的化学环境,并优雅地模拟其功能。基于这些结果,讨论了 C-C 键断裂反应机制。

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