Department of Cell and Molecular Biology and Microbiology, Faculty of Biological Science and Technology, University of Isfahan, Isfahan, Iran.
Department of Biology, Faculty of Basic Sciences, Shahrekord Branch, Islamic Azad University, Shahrekord, Iran.
Sci Rep. 2019 Sep 24;9(1):13759. doi: 10.1038/s41598-019-50256-3.
MicroRNAs (miRNAs) have been reported to contribute to the pathophysiology of the Parkinson's disease (PD), an age related-neurodegenerative disorder. The aim of present study was to compare the expression profiles of a new set of candidate miRNAs related to aging and cellular senescence in peripheral blood mononuclear cells (PBMCs) obtained from the PD patients with healthy controls and then in the early and advanced stages of the PD patients with their controls to clarify whether their expression was correlated with the disease severity. We have also proposed a consensus-based strategy to interpret the miRNAs expression data to gain a better insight into the molecular regulatory alterations during the incidence of PD. We evaluated the miRNA expression levels in the PBMCs obtained from 36 patients with PD and 16 healthy controls by the reverse transcription-quantitative real-time PCR and their performance to discriminate the PD patients from the healthy subjects assessed using the receiver operating characteristic curve analysis. Also, we applied our consensus and integration approach to construct a deregulated miRNA-based network in PD with the respective targets and transcription factors, and the enriched gene ontology and pathways using the enrichment analysis approach were obtained. There was a significant overexpression of miR-885 and miR-17 and the downregulation of miR-361 in the PD patients compared to the controls. The blood expression of miR-885 and miR-17 tended to increase along with the disease severity. On the other hand, the lower levels of miR-361 in the early stages of the PD patients, as compared to controls, and its higher levels in the advanced stages of PD patients, as compared to the early stages of the PD patients, were observed. Combination of all three miRNAs showed an appropriate value of AUC (0.985) to discriminate the PD patients from the healthy subjects. Also, the deregulated miRNAs were linked to the known PD pathways and the candidate related target genes were presented. We revealed 3 candidate biomarkers related to aging and cellular senescence for the first time in the patients with PD. Our in-silico analysis identified candidate target genes and TFs, including those related to neurodegeneration and PD. Overall, our findings provided novel insights into the probable age-regulatory mechanisms underlying PD and a rationale to further clarify the role of the identified miRNAs in the PD pathogenesis.
微小 RNA(miRNA)已被报道有助于帕金森病(PD)的病理生理学,这是一种与年龄相关的神经退行性疾病。本研究的目的是比较一组与衰老和细胞衰老相关的候选 miRNA 在 PD 患者外周血单核细胞(PBMC)中的表达谱与健康对照者,并在 PD 患者的早期和晚期与对照者进行比较,以明确其表达是否与疾病严重程度相关。我们还提出了一种基于共识的策略来解释 miRNA 表达数据,以更好地了解 PD 发病过程中的分子调控变化。我们通过逆转录定量实时 PCR 评估了 36 名 PD 患者和 16 名健康对照者 PBMC 中的 miRNA 表达水平,并使用接收器操作特征曲线分析评估了其区分 PD 患者和健康受试者的性能。此外,我们应用我们的共识和整合方法,构建了一个基于失调 miRNA 的 PD 网络,包括各自的靶标和转录因子,并使用富集分析方法获得了富集的基因本体论和途径。与对照组相比,PD 患者的 miR-885 和 miR-17 表达显著上调,miR-361 表达下调。miR-885 和 miR-17 的血液表达水平随着疾病的严重程度而升高。另一方面,与对照组相比,PD 患者早期阶段 miR-361 水平较低,而与 PD 患者早期阶段相比,晚期阶段 miR-361 水平较高。组合所有三种 miRNA 显示出适当的 AUC 值(0.985),可区分 PD 患者和健康受试者。此外,失调的 miRNA 与已知的 PD 途径有关,候选相关靶基因也被提出。我们首次在 PD 患者中发现了与衰老和细胞衰老相关的 3 种候选生物标志物。我们的计算机分析确定了候选靶基因和 TFs,包括与神经退行性变和 PD 相关的靶基因和 TFs。总之,我们的研究结果为 PD 潜在的年龄调节机制提供了新的见解,并为进一步阐明鉴定的 miRNA 在 PD 发病机制中的作用提供了依据。