Department of Computer Science and Engineering, Indian Institute of Technology (Indian School of Mines) Dhanbad, 826004, India; Department of Computer Science and Engineering, National Institute of Technology, Agartala, 799046, India.
Department of Computer Science and Engineering, Indian Institute of Technology (Indian School of Mines) Dhanbad, 826004, India.
Chemosphere. 2019 Nov;235:976-984. doi: 10.1016/j.chemosphere.2019.07.027. Epub 2019 Jul 4.
Triclosan (TCS) is chemically designated as 5-chloro-2-(2,4-dichlorophenoxy) phenol and is considered as endocrine-disrupting chemical (EDC). The various diseases found due to exposure of TCS, have been linked with modulation of the human enoyl-acyl carrier protein-reductase (hER). However, the new protein targets for TCS other than hER, which are responsible for various diseases, are still unknown. In the present study, a bioinformatics approach was used to identify new possible targets for TCS. A text mining study was initially performed to understand the association of TCS in various biochemical processes. Discovery studio software 4.1 was used to carry out inverse virtual screening for 226 numbers of pathway proteins by docking study using CHARMm based docking tool, and twenty proteins were screened. CDOCKER energy values lower than -12.65 kcal/mol was considered for the screening of selected proteins. Three new proteins; Receptor-interacting protein 1 (RIP1), Apoptosis signal-regulating kinase 1 (ASK1) and B-cell lymphoma 2 (Bcl-2) from Apoptosis Signaling Pathway revealed best CDOCKER energy with triclosan which was -26.88, -23.34 and -22.96 kcal/mol respectively. The interaction of TCS with RIP1 and ASK1 were mostly hydrophobic; however, hydrogen bond type interaction was found in TCS/Bcl2 complex. Therefore, docking-based inverse virtual screening study suggests that TCS has other targets rather than hER, which can modulate various biochemical processes. The docking protocol was validated through evaluation of root-mean-square deviation (RMSD), key interaction score system (KISS) and the relationship between the docking energy and toxicity data available in ToxCast database. Low RMSD value (0.55 ˚A) and high KISS score (0.66) along with higher correlation (R = 0.9798) between docking affinity and toxicity indicated that docking protocol can be used to optimize the binding energetics.
三氯生(TCS)的化学名称为 5-氯-2-(2,4-二氯苯氧基)苯酚,被认为是一种内分泌干扰化学物质(EDC)。由于接触 TCS 而发现的各种疾病与人类烯酰基辅酶 A 还原酶(hER)的调节有关。然而,除了 hER 之外,TCS 负责各种疾病的新蛋白质靶标仍然未知。在本研究中,使用生物信息学方法来确定 TCS 的新可能靶标。首先进行文本挖掘研究,以了解 TCS 在各种生化过程中的关联。使用 Discovery Studio 软件 4.1 通过基于 CHARMm 的对接工具进行对接研究,对 226 种途径蛋白进行反向虚拟筛选,筛选出 20 种蛋白。筛选出 CDOCKER 能量值低于-12.65 kcal/mol 的选定蛋白。从凋亡信号通路中发现三种新的蛋白质:受体相互作用蛋白 1(RIP1)、凋亡信号调节激酶 1(ASK1)和 B 细胞淋巴瘤 2(Bcl-2),与三氯生的 CDOCKER 能量分别为-26.88、-23.34 和-22.96 kcal/mol。三氯生与 RIP1 和 ASK1 的相互作用主要是疏水的;然而,在 TCS/Bcl2 复合物中发现了氢键类型的相互作用。因此,基于对接的反向虚拟筛选研究表明,TCS 除了 hER 之外还有其他可以调节各种生化过程的靶标。通过评估均方根偏差(RMSD)、关键相互作用评分系统(KISS)以及在 ToxCast 数据库中可用的对接能量与毒性数据之间的关系,对对接方案进行了验证。低 RMSD 值(0.55 ˚A)和高 KISS 评分(0.66)以及对接亲和力与毒性之间的更高相关性(R=0.9798)表明,对接方案可用于优化结合能。