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4-HNE 修饰对 ZU5-ANK 结构域及其与β- spectrin 形成复合物的影响:分子动力学模拟研究。

Effect of 4-HNE Modification on ZU5-ANK Domain and the Formation of Their Complex with β-Spectrin: A Molecular Dynamics Simulation Study.

机构信息

Analytical Chemistry and Biomedicine Group, Faculty of Exact and Natural Sciences, Campus of San Pablo, First floor Lab. 109 , University of Cartagena , Cra. 50 #24-120 , PA 130015 , Cartagena , Colombia.

Department of Medicinal Chemistry, Skaggs Pharmacy Research Building , University of Utah , 257 1400 E , Salt Lake City , Utah 84112 , United States.

出版信息

J Chem Inf Model. 2020 Feb 24;60(2):805-820. doi: 10.1021/acs.jcim.9b00772. Epub 2019 Dec 23.

Abstract

4-HNE-modified ankyrins have been described in diseases such as diabetes, renal failure, G6PD deficient, sickle cell trait, infected erythrocytes with different AB0 blood groups. However, effects at the atomic level of this carbonylation on structure and function of modified protein are not yet fully understood. We present a study based on molecular dynamics simulations of nine 4-HNE modified residues of the ZU5-ANK ankyrin domain with β-spectrin and their binding energy profiles. Results show that 4-HNE induced local conformational changes over all protein systems evaluated, increased mobility in the modification sites, and localized structural changes between the positively charged patch of the ZU5-ANK domain. Carbonylation with 4-HNE on lysine residues decreased the affinity between ZU5-ANK and the 14-β-spectrin repeat by reducing electrostatic and van der Waals interactions. The presented work provides further insight into understanding the loss of human erythrocyte deformation capacity under conditions of oxidative stress in different diseases.

摘要

已在糖尿病、肾衰竭、G6PD 缺乏、镰状细胞特征、不同 AB0 血型感染的红细胞等疾病中描述了 4-HNE 修饰的锚蛋白。然而,这种羰基化作用对修饰蛋白结构和功能的原子水平影响尚不完全清楚。我们提出了一项基于分子动力学模拟的研究,模拟了 ZU5-ANK 锚蛋白域的九个 4-HNE 修饰残基与 β- spectrin 的结合能谱。结果表明,4-HNE 诱导了所有评估的蛋白质系统的局部构象变化,增加了修饰部位的迁移率,并在 ZU5-ANK 结构域的正电荷斑之间产生了局部结构变化。赖氨酸残基的 4-HNE 羰基化作用通过减少静电和范德华相互作用降低了 ZU5-ANK 与 14-β- spectrin 重复序列的亲和力。所提出的工作进一步深入了解了在不同疾病的氧化应激条件下,人类红细胞变形能力丧失的机制。

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