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筛选二维材料以用于多种遗传物质的运输和递送。

Screening two dimensional materials for the transportation and delivery of diverse genetic materials.

机构信息

School of Chemical Sciences, Indian Association for the Cultivation of Science, 2A and 2B Raja S.C. Mullick Road, Jadavpur, Kolkata-700032, West Bengal, India.

出版信息

Nanoscale. 2020 Jan 2;12(2):703-719. doi: 10.1039/c9nr05930j.

Abstract

In spite of several reports of graphene and other 2D materials concerning their capacity for biomolecular adsorption and delivery, recent toxicity evaluations found them to be nanotoxic toward different biomolecules, especially nucleic acids. Therefore, there is urgent demand for the synthesis of 2D materials exhibiting biocompatible and non-nanotoxic features. In this article, employing classical molecular dynamics simulations, we provide a benchmarking of h2D-C2N, graphene and hexagonal boron nitride (h-BN) toward the adsorption, preservation, targeting and delivery of various classes of nucleic acids namely single stranded DNA, double stranded natural as well as unnatural base substituted DNA and two different types of human telomeric guanine quadruplexes, all comprising different secondary structures. Our simulations reveal that, while h2D-C2N preserves the structures of most of the nucleic acids, graphene and h-BN disrupt them through strong π-π stacking with aromatic nucleobases. Interestingly, for the first time we identified a 'quartet-by-quartet' disruption mechanism of guanine quadruplexes, but only on graphene and h-BN. The lateral diffusion of adsorbed nucleic acids over C2N is restricted unlike that over both graphene and h-BN, thereby increasing the targeting efficacy for C2N. Modeling of the delivery phenomena suggests orders of magnitude longer release times from graphene and h-BN compared to C2N, thereby demonstrating the preferential suitability of C2N for all the hierarchical steps of nucleic acid transportation.

摘要

尽管有几份关于石墨烯和其他二维材料在生物分子吸附和递送上的能力的报告,但最近的毒性评估发现它们对不同的生物分子,特别是核酸,具有纳米毒性。因此,迫切需要合成具有生物相容性和非纳米毒性特征的二维材料。在本文中,我们采用经典分子动力学模拟,对 h2D-C2N、石墨烯和六方氮化硼(h-BN)在吸附、保存、靶向和递送各种类型的核酸(即单链 DNA、双链天然和非天然碱基取代 DNA 以及两种不同类型的人类端粒鸟嘌呤四链体)方面进行了基准测试,这些核酸都具有不同的二级结构。我们的模拟表明,虽然 h2D-C2N 可以保留大多数核酸的结构,但石墨烯和 h-BN 通过与芳香族碱基的强 π-π 堆积来破坏它们。有趣的是,我们首次确定了鸟嘌呤四链体的“四分体四分体”破坏机制,但仅在石墨烯和 h-BN 上。与石墨烯和 h-BN 相比,吸附的核酸在 C2N 上的横向扩散受到限制,从而增加了 C2N 的靶向效率。递药现象的建模表明,与 C2N 相比,石墨烯和 h-BN 的释放时间长几个数量级,从而证明了 C2N 对核酸运输的所有分层步骤的优先适用性。

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