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作为潜在药物靶点的阿拉伯糖基转移酶C:分子对接研究的见解

Arabinosyltransferase C enzyme of , a potential drug target: An insight from molecular docking study.

作者信息

Das Nisha, Jena Pradip Kumar, Pradhan Sukanta Kumar

机构信息

Department of Chemistry, College of Basic Science and Humanities, Odisha University of Agriculture and Technology, Bhubaneswar, 751003, Odisha, India.

BIF Centre, Department of Bioinformatics, Centre for Post Graduate Studies, Odisha University of Agriculture and Technology, Bhubaneswar, 751003, Odisha, India.

出版信息

Heliyon. 2020 Feb 15;6(2):e02693. doi: 10.1016/j.heliyon.2019.e02693. eCollection 2020 Feb.

Abstract

Multi-drug resistant in (M.tb) is considered as major bottleneck in the treatment and cure of tuberculosis (TB). Several anti-tubercular drugs fail in its efficacy due to drug-resistant M.tb developed mechanism for resistance. So, research across globe has been carried out to develop effective anti-TB drugs to improve the treatment of these strains. Traditional drug development methods have been proved unsuccessful as it fails to develop a broad-spectrum drug due to lack of structure based approach. Several studies have been conducted in this regard and identified several drug target sites that influence drug-resistant M.tb strains. In this study, the attempt was to study the interaction between the protein Arabinosyltransferase C with the two existing drugs (Ethambutol and Isoniazid) and five modified molecules derived from Ethambutol by calculating their binding affinity and mode of binding through molecular docking study using AutoDock 4. From the comparison study of the existing drug (EMB and INH) and the five proposed modified molecules (Emb1, Emb2, Emb3, Emb4 and Emb5), it is analysed that Emb1 and Emb3 with binding affinities -5.77 kcal/mol and -5.13 kcal/mol respectively can be considered as potential inhibitors of Arabinosyltransferase C in which is responsible for cell wall synthesis. The facts provided may be further verified experimentally for future drug discovery process to make a stand against tuberculosis and contribute an advance research for worthy antimycobacterial strategies.

摘要

结核分枝杆菌(M.tb)的多重耐药性被认为是结核病治疗和治愈的主要瓶颈。由于耐药性结核分枝杆菌产生了耐药机制,几种抗结核药物的疗效不佳。因此,全球范围内都在进行研究以开发有效的抗结核药物来改善对这些菌株的治疗。传统的药物开发方法已被证明是不成功的,因为缺乏基于结构的方法,无法开发出广谱药物。在这方面已经进行了几项研究,并确定了几个影响耐药性结核分枝杆菌菌株的药物靶点。在本研究中,旨在通过使用AutoDock 4进行分子对接研究,计算蛋白质阿拉伯糖基转移酶C与两种现有药物(乙胺丁醇和异烟肼)以及从乙胺丁醇衍生的五个修饰分子之间的相互作用,包括它们的结合亲和力和结合模式。通过对现有药物(EMB和INH)与五个提出的修饰分子(Emb1、Emb2、Emb3、Emb4和Emb5)的比较研究分析得出,结合亲和力分别为-5.77 kcal/mol和-5.13 kcal/mol的Emb1和Emb3可被视为结核分枝杆菌中负责细胞壁合成的阿拉伯糖基转移酶C的潜在抑制剂。所提供的事实可能需要在未来的药物发现过程中通过实验进一步验证,以对抗结核病并为有价值的抗分枝杆菌策略做出进一步的研究贡献。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/8177/7026281/2e964a991f1e/gr1.jpg

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