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因基因新型部分重复导致的IV型并指一家系的外显子组靶向测序:中国福建省首例病例报告

Sub-Exome Target Sequencing in a Family With Syndactyly Type IV Due to a Novel Partial Duplication of the Gene: First Case Report in Fujian Province of China.

作者信息

Shi Lijing, Huang Hui, Jiang Qiuxia, Huang Rongsen, Fu Wanyu, Mao Liangwei, Wei Xiaoming, Cui Huanhuan, Lin Keke, Cai Licheng, Yang You, Wang Yuanbai, Wu Jing

机构信息

Department of Ultrasound, Quanzhou Women's and Children's Hospital, Quanzhou, China.

BGI Genomics, BGI-Shenzhen, Shenzhen, China.

出版信息

Front Genet. 2020 Feb 28;11:130. doi: 10.3389/fgene.2020.00130. eCollection 2020.

DOI:10.3389/fgene.2020.00130
PMID:32184803
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC7058806/
Abstract

Syndactyly is one of the most frequent hereditary limb malformations with clinical and genetical complexity. Autosomal dominant syndactyly type IV (SD4) is a rare form of syndactyly, caused by heterozygous mutations in a sonic hedgehog () regulatory element () which resides in intron 5 of the gene on chromosome 7q36.3. SD4 is characterized by complete cutaneous syndactyly of the fingers, accompanied by cup-shaped hands due to flexion of the fingers and polydactyly. Here, for the first time, we reported a large Chinese family from Fujian province, manifesting cup-shaped hands consistent with SD4 and intrafamilial heterogeneity in clinical phenotype of tibial and fibulal shortening, triphalangeal thumb-polysyndactyly syndrome (TPTPS). We identified a novel duplication of ∼222 kb covering exons 2-17 of the gene in this family by sub-exome target sequencing. This case expands our new clinical understanding of SD4 phenotype and again confirms the feasibility to detect copy number variation by sub-exome target sequencing.

摘要

并指畸形是最常见的遗传性肢体畸形之一,具有临床和遗传复杂性。常染色体显性IV型并指畸形(SD4)是并指畸形的一种罕见形式,由位于7号染色体q36.3上的音猬因子(SHH)调控元件(ZRS)中的杂合突变引起。SD4的特征是手指完全皮肤并指,伴有因手指屈曲和多指畸形导致的杯状手。在此,我们首次报道了一个来自福建省的大型中国家系,表现出与SD4一致的杯状手,以及胫腓骨缩短、三节拇指-多指畸形综合征(TPTPS)临床表型的家族内异质性。我们通过外显子组靶向测序在这个家系中鉴定出一个约222 kb的新重复,覆盖SHH基因的外显子2-17。该病例扩展了我们对SD4表型的新临床认识,并再次证实了通过外显子组靶向测序检测拷贝数变异的可行性。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1f82/7058806/84b4f76a13d3/fgene-11-00130-g002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1f82/7058806/f3051006e175/fgene-11-00130-g001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1f82/7058806/84b4f76a13d3/fgene-11-00130-g002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1f82/7058806/f3051006e175/fgene-11-00130-g001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1f82/7058806/84b4f76a13d3/fgene-11-00130-g002.jpg

相似文献

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Sub-Exome Target Sequencing in a Family With Syndactyly Type IV Due to a Novel Partial Duplication of the Gene: First Case Report in Fujian Province of China.因基因新型部分重复导致的IV型并指一家系的外显子组靶向测序:中国福建省首例病例报告
Front Genet. 2020 Feb 28;11:130. doi: 10.3389/fgene.2020.00130. eCollection 2020.
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Large duplication in LMBR1 gene in a large Chinese pedigree with triphalangeal thumb polysyndactyly syndrome.在中国一个患有三指节拇指多指畸形综合征的大型家系中发现LMBR1基因的大片段重复。
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引用本文的文献

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Genes (Basel). 2022 Apr 27;13(5):771. doi: 10.3390/genes13050771.
2
Genetic determinants of syndactyly: perspectives on pathogenesis and diagnosis.并指的遗传决定因素:发病机制和诊断的新视角。
Orphanet J Rare Dis. 2022 May 12;17(1):198. doi: 10.1186/s13023-022-02339-0.
3
Epidemiological statistics of congenital thumb duplication in the Chinese population.中国人群先天性拇指复拇指畸形的流行病学统计。

本文引用的文献

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Technical standards for the interpretation and reporting of constitutional copy-number variants: a joint consensus recommendation of the American College of Medical Genetics and Genomics (ACMG) and the Clinical Genome Resource (ClinGen).《常染色体拷贝数变异解释和报告的技术标准:美国医学遗传学与基因组学学会(ACMG)与临床基因组资源(ClinGen)的联合共识推荐》
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A novel mutation in , causative of autosomal dominant retinitis pigmentosa, using the BGISEQ-500 sequencer.使用BGISEQ-500测序仪发现一种导致常染色体显性遗传性视网膜色素变性的新型突变。
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使用BGISEQ-500和HiSeq X Ten全基因组测序进行种系和体细胞变异鉴定。
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Incidence of Acute Complications Following Surgery for Syndactyly and Polydactyly: An Analysis of the National Surgical Quality Improvement Program Database from 2012 to 2014.并指及多指手术后急性并发症的发生率:对2012年至2014年国家外科质量改进计划数据库的分析
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Microduplication of 7q36.3 encompassing the SHH long‑range regulator (ZRS) in a patient with triphalangeal thumb‑polysyndactyly syndrome and congenital heart disease.一名患有三节指骨拇指-多指畸形综合征和先天性心脏病的患者,其7q36.3区域存在微小重复,该区域包含音猬因子(SHH)长程调控元件(ZRS)。
Mol Med Rep. 2017 Feb;15(2):793-797. doi: 10.3892/mmr.2016.6092. Epub 2016 Dec 29.
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Development. 2016 Aug 15;143(16):2994-3001. doi: 10.1242/dev.139188. Epub 2016 Jul 11.
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