新型膦铜(I)配合物 DNA 穿线嵌入的平衡和位点选择性分析:X 射线分析、光谱和分子模拟研究的见解。

Equilibrium and site selective analysis for DNA threading intercalation of a new phosphine copper(I) complex: Insights from X-ray analysis, spectroscopic and molecular modeling studies.

机构信息

Department of Inorganic Chemistry, Faculty of Chemistry, Razi University, Kermanshah, Iran; Medical Biology Research Center (MBRC), Kermanshah University of Medical Sciences, Kermanshah, Iran.

Department of Inorganic Chemistry, Faculty of Chemistry, Razi University, Kermanshah, Iran; Medical Biology Research Center (MBRC), Kermanshah University of Medical Sciences, Kermanshah, Iran.

出版信息

Spectrochim Acta A Mol Biomol Spectrosc. 2020 Jul 5;235:118280. doi: 10.1016/j.saa.2020.118280. Epub 2020 Mar 19.

Abstract

To clarify the interaction of phosphine copper(I) complex with DNA, our study reports the synthesis of a new phosphine copper(I) complex, along with a detailed analysis of the geometry characterization and its interaction with double-stranded DNA. The triclinic phase Cu(PPh)(L)(I) with a tetrahedral geometry was identified as the product of the reaction of copper(I) iodide with (E,E)-N,N'-1,2-Ethanediylbis[1-(3-pyridinyl)methanimine] ligand and triphenylphosphine by single-crystal X-ray analysis. Molecular interaction of the synthesized complex with the calf thymus deoxyribonucleic acid (ct-DNA) was investigated in the physiological buffer (pH 7.4) by multi-spectroscopic approaches associated with a competitive displacement towards Hoechst 33258 and methylene blue (MB) as groove and intercalator probes. The fluorescence and UV/Vis results detected the formation of a complex-DNA adduct in the ground-state with a binding affinity in order of 10 M, which is in keeping with both groove binders and intercalators. The thermodynamic parameters, ΔS = -200.31 ± 0.08 cal/mol·K and ΔH = -63.11 ± 0.24 kcal/mol, confirmed that the van der Waals interaction is the main driving force for the binding process. Moreover, the ionic strength and pH effect experiments demonstrated the electrostatic interactions between the complex and DNA is negligible. Analysis of the molecular docking simulation declared the flat (E,E)-N,N'-1,2-Ethanediylbis[1-(3-pyridinyl)methanimine] part of the complex was inserted between the sequential A…T/A…T base pairs, while the phosphine substituents were located in the groove, i.e. threading intercalation. Besides, the cytotoxicity of the complex against the MCF-7 human breast cancer cells was detected at IC50 = 10 μg/mL.

摘要

为了阐明膦铜(I)配合物与 DNA 的相互作用,我们研究报告了一种新的膦铜(I)配合物的合成,并对其几何特征及其与双链 DNA 的相互作用进行了详细分析。通过单晶 X 射线分析,确定反应产物为铜(I)碘化物与(E,E)-N,N'-1,2-乙二基双[1-(3-吡啶基)亚甲基胺]配体和三苯基膦的三斜相 Cu(PPh)(L)(I),具有四面体几何形状。通过多光谱方法结合与 Hoechst 33258 和亚甲基蓝(MB)作为沟和嵌入剂探针的竞争置换,在生理缓冲液(pH 7.4)中研究了合成配合物与小牛胸腺脱氧核糖核酸(ct-DNA)的分子相互作用。荧光和紫外/可见结果检测到在基态下形成了一种配合物-DNA 加合物,其结合亲和力为 10 M 左右,这与沟结合剂和嵌入剂一致。热力学参数ΔS=-200.31±0.08 cal/mol·K 和ΔH=-63.11±0.24 kcal/mol,证实范德华相互作用是结合过程的主要驱动力。此外,离子强度和 pH 值影响实验表明,复合物与 DNA 之间的静电相互作用可以忽略不计。分子对接模拟分析表明,复合物的平面(E,E)-N,N'-1,2-乙二基双[1-(3-吡啶基)亚甲基胺]部分插入连续的 A…T/A…T 碱基对之间,而膦取代基位于沟中,即穿线嵌入。此外,该配合物对 MCF-7 人乳腺癌细胞的细胞毒性在 IC50=10μg/mL 时被检测到。

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