Biotherapeutics Discovery Department, Boehringer Ingelheim, Ridgefield, Connecticut 06877, United States.
Mol Pharm. 2020 Jul 6;17(7):2555-2569. doi: 10.1021/acs.molpharmaceut.0c00257. Epub 2020 Jun 11.
The ability of antibodies to recognize their target antigens with high specificity is fundamental to their natural function. Nevertheless, therapeutic antibodies display variable and difficult-to-predict levels of nonspecific and self-interactions that can lead to various drug development challenges, including antibody aggregation, abnormally high viscosity, and rapid antibody clearance. Here we report a method for predicting the overall specificity of antibodies in terms of their relative risk for displaying high levels of nonspecific or self-interactions at physiological conditions. We find that individual and combined sets of chemical rules that limit the maximum and minimum numbers of certain solvent-exposed amino acids in antibody variable regions are strong predictors of specificity for large panels of preclinical and clinical-stage antibodies. We also demonstrate how the chemical rules can be used to identify sites that mediate nonspecific interactions in suboptimal antibodies and guide the design of targeted sublibraries that yield variants with high antibody specificity. These findings can be readily used to improve the selection and engineering of antibodies with drug-like specificity.
抗体识别其目标抗原的高特异性能力是其天然功能的基础。然而,治疗性抗体表现出可变的和难以预测的非特异性和自我相互作用水平,这可能导致各种药物开发挑战,包括抗体聚集、异常高的粘度和快速抗体清除。在这里,我们报告了一种根据抗体在生理条件下显示高水平非特异性或自我相互作用的相对风险来预测抗体整体特异性的方法。我们发现,限制抗体可变区中某些溶剂暴露氨基酸的最大和最小数量的单个和组合的化学规则是对大量临床前和临床阶段抗体进行特异性预测的强指标。我们还展示了如何使用化学规则来识别在次优抗体中介导非特异性相互作用的位点,并指导设计靶向亚文库,从而产生具有高抗体特异性的变体。这些发现可以很容易地用于改善具有类药性特异性的抗体的选择和工程。