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Heavy-tailed prior distributions for sequence count data: removing the noise and preserving large differences.
Bioinformatics. 2019 Jun 1;35(12):2084-2092. doi: 10.1093/bioinformatics/bty895.
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Topical ROR Inverse Agonists Suppress Inflammation in Mouse Models of Atopic Dermatitis and Acute Irritant Dermatitis.
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Transcript-level expression analysis of RNA-seq experiments with HISAT, StringTie and Ballgown.
Nat Protoc. 2016 Sep;11(9):1650-67. doi: 10.1038/nprot.2016.095. Epub 2016 Aug 11.
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Identification of Tazarotenic Acid as the First Xenobiotic Substrate of Human Retinoic Acid Hydroxylase CYP26A1 and CYP26B1.
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HISAT: a fast spliced aligner with low memory requirements.
Nat Methods. 2015 Apr;12(4):357-60. doi: 10.1038/nmeth.3317. Epub 2015 Mar 9.
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StringTie enables improved reconstruction of a transcriptome from RNA-seq reads.
Nat Biotechnol. 2015 Mar;33(3):290-5. doi: 10.1038/nbt.3122. Epub 2015 Feb 18.
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An alternative retinoic acid-responsive Stra6 promoter regulated in response to retinol deficiency.
J Biol Chem. 2015 Feb 13;290(7):4356-66. doi: 10.1074/jbc.M114.613968. Epub 2014 Dec 28.
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Trimmomatic: a flexible trimmer for Illumina sequence data.
Bioinformatics. 2014 Aug 1;30(15):2114-20. doi: 10.1093/bioinformatics/btu170. Epub 2014 Apr 1.
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Causal analysis approaches in Ingenuity Pathway Analysis.
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