Suppr超能文献

人眼黄斑和周边视网膜细胞图谱。

Cell Atlas of The Human Fovea and Peripheral Retina.

机构信息

Department of Molecular and Cellular Biology and Center for Brain Science, Harvard University, Cambridge, MA, 02138, USA.

Department of Ophthalmology, Stein Eye Institute, University of California Los Angeles, Los Angeles, CA, 90095, USA.

出版信息

Sci Rep. 2020 Jun 17;10(1):9802. doi: 10.1038/s41598-020-66092-9.

Abstract

Most irreversible blindness results from retinal disease. To advance our understanding of the etiology of blinding diseases, we used single-cell RNA-sequencing (scRNA-seq) to analyze the transcriptomes of ~85,000 cells from the fovea and peripheral retina of seven adult human donors. Utilizing computational methods, we identified 58 cell types within 6 classes: photoreceptor, horizontal, bipolar, amacrine, retinal ganglion and non-neuronal cells. Nearly all types are shared between the two retinal regions, but there are notable differences in gene expression and proportions between foveal and peripheral cohorts of shared types. We then used the human retinal atlas to map expression of 636 genes implicated as causes of or risk factors for blinding diseases. Many are expressed in striking cell class-, type-, or region-specific patterns. Finally, we compared gene expression signatures of cell types between human and the cynomolgus macaque monkey, Macaca fascicularis. We show that over 90% of human types correspond transcriptomically to those previously identified in macaque, and that expression of disease-related genes is largely conserved between the two species. These results validate the use of the macaque for modeling blinding disease, and provide a foundation for investigating molecular mechanisms underlying visual processing.

摘要

大多数不可逆转的失明是由视网膜疾病引起的。为了深入了解致盲疾病的病因,我们利用单细胞 RNA 测序(scRNA-seq)技术,对来自七位成年供体的黄斑和周边视网膜的约 85000 个细胞的转录组进行了分析。通过计算方法,我们在 6 个类别中鉴定出了 58 种细胞类型:光感受器、水平细胞、双极细胞、无长突细胞、视网膜神经节细胞和非神经元细胞。几乎所有类型在两个视网膜区域都有共享,但在共享类型的黄斑和周边群体之间,在基因表达和比例上存在显著差异。然后,我们利用人类视网膜图谱,对 636 个与致盲疾病的原因或风险因素相关的基因的表达进行了定位。许多基因的表达呈现出显著的细胞类型、类型或区域特异性模式。最后,我们比较了人类和食蟹猴(Macaca fascicularis)细胞类型之间的基因表达特征。结果表明,超过 90%的人类细胞类型在转录水平上与以前在猕猴中鉴定的细胞类型相对应,并且疾病相关基因的表达在两种物种之间基本保守。这些结果验证了猕猴在致盲疾病建模中的应用,并为研究视觉处理的分子机制提供了基础。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/a3fc/7299956/384d9f4a12cc/41598_2020_66092_Fig1_HTML.jpg

文献AI研究员

20分钟写一篇综述,助力文献阅读效率提升50倍。

立即体验

用中文搜PubMed

大模型驱动的PubMed中文搜索引擎

马上搜索

文档翻译

学术文献翻译模型,支持多种主流文档格式。

立即体验