Liu Hua-Ping, Lai Hung-Ming, Guo Zheng
Bioinformatics at Harbin Medical University.
King's College London.
Brief Bioinform. 2021 May 20;22(3). doi: 10.1093/bib/bbaa111.
The accuracy of prostate-specific antigen or clinical examination in prostate cancer (PCa) screening is in question, and circulating microRNAs (miRNAs) can be alternatives to PCa diagnosis. However, recent circulating miRNA biomarkers either are identified upon small sample sizes or cannot have robust diagnostic performance in every aspect of performance indicators. These may decrease applicability of potential biomarkers for the early detection of PCa. We reviewed recent studies on blood-derived miRNAs for prostate cancer diagnosis and carried out a large case study to understand whether circulating miRNA pairs, rather than single circulating miRNAs, could contribute to a more robust diagnostic model to significantly improve PCa diagnosis. We used 1231 high-throughput miRNA-profiled serum samples from two cohorts to design and verify a model based on class separability miRNA pairs (cs-miRPs). The pairwise model was composed of five circulating miRNAs coupled to miR-5100 and miR-1290 (i.e. five miRNA pairs, 5-cs-miRPs), reaching approximately 99% diagnostic performance in almost all indicators (sensitivity = 98.96%, specificity = 100%, accuracy = 99.17%, PPV = 100%, NPV = 96.15%) shown by a test set (n = 484: PCa = 384, negative prostate biopsies = 100). The nearly 99% diagnostic performance was also verified by an additional validation set (n = 140: PCa = 40, healthy controls = 100). Overall, the 5-cs-miRP model had 1 false positive and 7 false negatives among the 1231 serum samples and was superior to a recent 2-miRNA model (so far the best for PCa diagnosis) with 18 false positives and 80 false negatives. The present large case study demonstrated that circulating miRNA pairs could potentially bring more benefits to PCa early diagnosis for clinical practice.
前列腺特异性抗原或临床检查在前列腺癌(PCa)筛查中的准确性存在疑问,而循环微RNA(miRNA)可作为PCa诊断的替代方法。然而,近期的循环miRNA生物标志物要么是在小样本量的基础上确定的,要么在性能指标的各个方面都没有强大的诊断性能。这些可能会降低潜在生物标志物在PCa早期检测中的适用性。我们回顾了近期关于血液来源miRNA用于前列腺癌诊断的研究,并开展了一项大型病例研究,以了解循环miRNA对,而非单个循环miRNA,是否有助于构建一个更强大的诊断模型,从而显著改善PCa诊断。我们使用来自两个队列的1231份经过高通量miRNA分析的血清样本,设计并验证了一个基于类可分性miRNA对(cs-miRP)的模型。该成对模型由与miR-5100和miR-1290偶联的5种循环miRNA组成(即5个miRNA对,5-cs-miRP),在一个测试集(n = 484:PCa = 384,前列腺活检阴性 = 100)显示的几乎所有指标中达到了约99%的诊断性能(敏感性 = 98.96%,特异性 = 100%,准确性 = 99.17%,阳性预测值 = 100%,阴性预测值 = 96.15%)。另外一个验证集(n = 140:PCa = 40,健康对照 = 100)也验证了接近99%的诊断性能。总体而言,在1231份血清样本中,5-cs-miRP模型有1例假阳性和7例假阴性,优于近期的一个2-miRNA模型(迄今为止PCa诊断的最佳模型),后者有18例假阳性和80例假阴性。目前的大型病例研究表明,循环miRNA对可能会给PCa临床早期诊断带来更多益处。