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揭示钌-双二甲基亚砜与氨基酸残基及人血清白蛋白相互作用中氢键和张量的作用。

Unveiling the Role of Hydrogen Bonding and -Tensor in the Interaction of Ru-Bis-DMSO with Amino Acid Residue and Human Serum Albumin.

作者信息

Das Dharitri, Dutta Snigdha, Dowerah Dikshita, Deka Ramesh Chandra

机构信息

Department of Chemical Sciences, Tezpur University, Tezpur, 784028, Assam, India.

出版信息

J Phys Chem B. 2020 Jul 30;124(30):6459-6474. doi: 10.1021/acs.jpcb.0c02186. Epub 2020 Jul 21.

Abstract

Density functional theory calculations have been carried out to observe the role of hydrogen bonding in hydrolysis and the coordination mechanism of three amino acid residues (histidine, cysteine, and alanine) with Ru-bis-DMSO complex via which the complex tends to interact with the HSA protein receptor. The interaction mechanism shows that ruthenium complexes prefer to bind protein receptor through cysteine and histidine residues rather than through alanine, which has been confirmed by DFT evaluated H-bonding and -tensor analysis. The number of H-bonds plays a major role in stabilizing the intermediates and transition states involved in the Ru-bis-DMSO and amino acid residue interactions. Our theoretical -tensor values are in good agreement with the available experimental results. Further QM/MM calculation on the Ru-bis-DMSO-HSA adducts reveals that the adduct is more stable when Ru gets coordinated with histidine imidazole rather than cysteine. These investigations helped us in understanding the type of amino acid residue responsible for binding the metal complex Ru-bis-DMSO with the carrier protein HSA.

摘要

已进行密度泛函理论计算,以观察氢键在水解中的作用以及三种氨基酸残基(组氨酸、半胱氨酸和丙氨酸)与钌-双二甲基亚砜配合物的配位机制,通过该机制该配合物倾向于与HSA蛋白受体相互作用。相互作用机制表明,钌配合物更倾向于通过半胱氨酸和组氨酸残基而非丙氨酸与蛋白受体结合,这已通过DFT评估的氢键和张量分析得到证实。氢键的数量在稳定钌-双二甲基亚砜与氨基酸残基相互作用中涉及的中间体和过渡态方面起主要作用。我们的理论张量值与现有实验结果吻合良好。对钌-双二甲基亚砜-HSA加合物的进一步QM/MM计算表明,当钌与组氨酸咪唑而非半胱氨酸配位时,加合物更稳定。这些研究有助于我们了解负责将金属配合物钌-双二甲基亚砜与载体蛋白HSA结合的氨基酸残基类型。

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