Cracchiolo Olivia M, Geremia Danielle K, Corcelli Steven A, Serrano Arnaldo L
Department of Chemistry and Biochemistry, University of Notre Dame, Notre Dame, Indiana 46556, United States.
J Phys Chem B. 2020 Aug 13;124(32):6947-6954. doi: 10.1021/acs.jpcb.0c02444. Epub 2020 Aug 4.
Cation effects on proteins have been a challenge to understand. Herein, we present two-dimensional infrared (2DIR) spectroscopic measurements, coupled with molecular dynamics and spectroscopic calculations, of -methylacetamide (NMA), a common model of the peptide backbone, in aqueous CaCl. The 2DIR spectra reveal that the dynamics of the amide carbonyl of NMA is dominated by exchange between two states of varying hydration, one possessing a structure similar to aqueous NMA and one that is dehydrated by one hydrogen bond. In addition, we demonstrate that at high (>5 M) CaCl concentrations, direct binding of Ca to the carbonyl of NMA occurs, stabilizing an iminium-type resonance structure of NMA, with a characteristic C═N stretch frequency at 1680 cm. This species is only marginally populated and is only detectable in 2DIR spectra due to its larger transition strength.
阳离子对蛋白质的影响一直是理解上的一个挑战。在此,我们展示了在氯化钙水溶液中,对肽主链的常见模型——N-甲基乙酰胺(NMA)进行的二维红外(2DIR)光谱测量,并结合了分子动力学和光谱计算。二维红外光谱表明,NMA酰胺羰基的动力学主要由两种不同水合状态之间的交换主导,一种具有类似于水合NMA的结构,另一种通过一个氢键脱水。此外,我们证明,在高浓度(>5 M)氯化钙条件下,钙直接与NMA的羰基结合,稳定了NMA的亚胺型共振结构,其特征C═N伸缩频率为1680 cm⁻¹。该物种的丰度仅处于边缘水平,并且由于其较大的跃迁强度,仅在二维红外光谱中可检测到。